LOCUS       XM_039098429            3844 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid early-inducible protein
            1-epsilon-like (LOC100910848), transcript variant X1, mRNA.
ACCESSION   XM_039098429
VERSION     XM_039098429.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098429.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3844
                     /gene="LOC100910848"
                     /note="retinoic acid early-inducible protein
                     1-epsilon-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 27 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100910848"
                     /db_xref="RGD:6496302"
     CDS             326..1075
                     /gene="LOC100910848"
                     /codon_start=1
                     /product="retinoic acid early-inducible protein
                     1-beta-like isoform X1"
                     /protein_id="XP_038954357.1"
                     /db_xref="GeneID:100910848"
                     /db_xref="RGD:6496302"
                     /translation="MAENAAAEHHSFTGASCLLVFLGCLGFTLCADIDSLRCNLIVKS
                     AIKPGQPWYEGPCSMNGKTLFQVTSLGKLTKEENGTQACLILPQSLKNILELMRDHLL
                     NMESEQIKTMGNNTFQVTMQSQYNKGQLIDAFCNLTVDGLATDGQSSFHYNPTKDNWR
                     GSGQWERNRELKKGLQMMLMGDFGHCYEELLTLSGETPSKSLGSTVKTQAIVQRTPAT
                     QIPLNSAQSTFMIQSQNIFLYVGLVFIALIT"
ORIGIN      
        1 caacaacgca gcctcacttc ttggcttccg ctctcgtgcg gctgcgggcg gggcggagat
       61 ccggacgccc tgaagtgggc ggggcaatga agtgggagca cctccctcat tccaagtttt
      121 ccactccggg ttcggcagag cagcggaccg gtccttgccg cgaacctcag ggaggaacaa
      181 gcaagctgca aagttcccga ccattgctgg agttcatagg cgtggcgact ggcattttcg
      241 tgaatctctg agccggatcc ggggcggcac agaatcctca ccgcttctcc tcgcagctcc
      301 ggtcacacct gttgctcaga cgggtatggc agagaatgca gccgccgagc accattcttt
      361 cacaggagct tcatgccttt tggtttttct gggctgtctg gggttcacgc tgtgcgccga
      421 tatagactct ctacgctgca acttgattgt caaatctgct atcaaacctg gacagccgtg
      481 gtatgaagga ccatgctcaa tgaatggaaa gactctcttt caggtcacat ctttgggtaa
      541 actgacaaag gaggaaaatg gcactcaggc atgcctaatt ttgcctcaaa gcctgaaaaa
      601 tattttagaa ctgatgaggg accatctgct taacatggaa tcagagcaaa tcaagaccat
      661 gggtaataac accttccagg tcaccatgca gtctcagtat aataaaggac aactcattga
      721 tgccttctgc aacttgacag ttgatggact tgcaactgat ggacagtctt ccttccacta
      781 taatccaact aaagataact ggagagggag tggtcaatgg gagagaaaca gggaactaaa
      841 gaagggtcta cagatgatgc tcatgggaga tttcggccac tgctatgagg aattgttgac
      901 actctctgga gaaacaccaa gtaagtcatt aggatcaaca gtaaagaccc aggctatcgt
      961 acagcgtaca cctgccaccc agattccatt gaacagtgcc caatctacat ttatgatcca
     1021 gagtcaaaat atatttctat atgtaggatt agtcttcatc gcattgatca cttaggagtc
     1081 tttgcagttg ctatgatggt gaagaaaaaa ggtgctccct gctgctcctc ttcctctgca
     1141 gtctgatctg catcaccagc tgtcgggtga cacttgaaca ttgccagtga cttcttcagc
     1201 aaaatcacaa acatacgcat ttctgatgtc atctctaaaa tccatgctgt tgactttgaa
     1261 ccaaactggt gggagactga tggctgtcat cacctcgctc accagggcct cagggtgcac
     1321 taggctgttg ccatcagggg cttcctcttc ctctgatctt ttttcctttc tcaatcttgc
     1381 ctgctggcat tgtggaaatc aagcagggcc tacctctaat ttactcctca ctctgcaaaa
     1441 cagagcttgc cctgggtgcc tccattttac taccagcagc tggctgcctt ctgagtgcaa
     1501 tgcagacatc ggaggacaca atacctcact ttacacagag gcacatgtcc actcaagacc
     1561 atccaagata cggaggctga taatccccaa agtaaaaata tgtcgcctcc acagttatca
     1621 aaataggtgg gaagcagtgc gcacaagtgc atctcaaacc acatcagcat ccagctctga
     1681 ggatttatct caccctcgcc tggagccctg aagaggccac ctgatcctgc aatagttatg
     1741 tcaccacaaa cctgccccct ggctgtctgg tgtcagggaa cctgcaggca gagaactcct
     1801 ggccatatta agccctcagc tccacccaca ctgctaatgt ctcctccttg aatcactgtc
     1861 tgacagctca tctgctgctc atgctaatgt gggtctgcat ctcacctgct ggatcctcag
     1921 tcctgcacct cacctgtgca gttcactcag tgttgaggcc tggtgcagcc ctgcagctct
     1981 ccatgagctc ccttcacagc tcctctaacc tcctgcattg agtctgtctg tgtgtctgtt
     2041 atccctctgt ctctgcctcc agtctggtct ctttaaactc caatggcaac tctttcactc
     2101 ttctgcagtc attctgtgac ctaaggccat aagataactg tgtggtgttc aatgtgtgat
     2161 gtgagagtct acctcataat taagagtgga gtaagagagc caggggctgg ccagttgtca
     2221 gtggtaatta ggactacctg gcatcacagc cagtgaattg gatggagctg gtaaattaag
     2281 acatagatgt gagcacctat tttcctggca tagctcactc tggatttcat tcacaatatt
     2341 ataaccaccc agtgagtaaa cagcccattg ttaacaatat tggcaataca caatatcttt
     2401 tttcaacaaa tgaaaggtct ggtgctagaa ataaaattca gcatcccttc caaaccctgg
     2461 tgaacactga gtacgctttc tccactgacc caatgcctgc ctcacactgc agtgtaatta
     2521 cacctcacgc tgttcagggt gtgatctgag gaaggcgata ggaacagggg agacttccgt
     2581 ccagccatgg tcatcttctt gacgaaggta tttttctgtg aaatgactga aaacttgaac
     2641 tctggggtct tcacatcctc gctgaagctg tcatgttctt ttagggctat cccactgtcc
     2701 tctatgctgg gacacggcca acctggaggt gaaggtgaaa atcctggctg tcagcccagc
     2761 ccttgatcct cattgcttta ggcctctcgt ggtggccatt gcaaactcag aaagtcagtt
     2821 acagcagact tgaagaacag acagtggttt agtctgttac atagcttcat gagtgagcag
     2881 ctcacacccc aagacatcaa tgaatgtgac tatattaaat gcagagactt ttaaaaatat
     2941 tatgaggctg ctttgcaaat atattttggg aactggatcg aatggtcctc aaacttgaat
     3001 tatgaagatc acttgtgtct tttttttttt tttaaagatt tatttattta tatataagca
     3061 cattgtaggt gtcctcatct acacctgaag agggcatcag atctcattac aggtggttgt
     3121 gagccaccac gtggttgctg ggatttgaac tcagggcccc tggaagagta gtcagtgctc
     3181 ttaaccactg agccatctct ccagccccca ctttgtgtct taacattaaa agattacaca
     3241 cttctgatga acaaatattt aaaaaagcat tttaaatcaa tcttagcgct gataagactc
     3301 cattgttatg aagttaaagt ctagacaaat tcagatgaaa ttactagcaa ttattttatc
     3361 aaatcataca tgtaattaaa aatcttaaaa gaaaacccct accactttac actgaatgtt
     3421 ataaactctg taacatacag aaccttctgt gttttcataa tctcttagca accatgttac
     3481 ttgaaattaa gtttttgtac aaagccttct tcccataaac ttcttcccat cagagaagcg
     3541 actttttgtc tccatacact cactatcatc tctttattat tccttccttg ttaaattcct
     3601 gatgtaattt agacctcttg ttttcctgga cgttataaaa ccctgaacac agcatgcatt
     3661 tggatgtaca acaatatttt cacgcattac tatgttattg gttaatatgc tctttcctac
     3721 ctagcttcaa taaccaggtt acattgcttg tataatgctg aaattccttt tttcttcaca
     3781 aattttaaat actccagtgt gtgagatttg attgtatttc atgaattaaa aaaactgaac
     3841 tagg
//
