LOCUS       XM_039090049            2376 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired immunoglobulin-like type 2
            receptor alpha-like (LOC100910497), transcript variant X1, mRNA.
ACCESSION   XM_039090049
VERSION     XM_039090049.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2376
                     /gene="LOC100910497"
                     /note="paired immunoglobulin-like type 2 receptor
                     alpha-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:100910497"
                     /db_xref="RGD:6498401"
     CDS             64..1056
                     /gene="LOC100910497"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor alpha
                     isoform X1"
                     /protein_id="XP_038945977.1"
                     /db_xref="GeneID:100910497"
                     /db_xref="RGD:6498401"
                     /translation="MFAQDEDWGKLWKLISCQRQGIHAFLTARLPSLPGKNLAMARLL
                     LLLLSAACLHSGNSAGYPKKYDYGVDQPAVLSGVQGSSIEIPFSFYFPWNLTKDPQMS
                     IAWRWKNFHGEFIYNSTQPFIHEHFKDRLIMNWTQGQTSGVLRILNFKKNDQATYFGR
                     VLLQTTEGMKVWQSIPGTNLTVTNNTSTPATLPSTTTATPSTHPQTVTTEGMKDEPKS
                     GLDPQTIIVLAVAAAVFLAGVLGLTVFLGWRRKQGQRTKAETPAREPLENSEKRESIG
                     HEGQYMDPTENPKDNNIVYASISLSSPTSPGAAPSLPVQKNPQEETVYSTIKAK"
ORIGIN      
        1 agtactgtgg acttgtcaga aagtggactc ttaaaagtca ctgatgctgg tctgagggag
       61 gccatgtttg ctcaggatga agactgggga aagttgtgga agctgatcag ctgtcaaaga
      121 cagggcatcc acgccttcct gacagcccgg ttgccctcac ttcctggaaa gaatctggct
      181 atggctcggc ttctccttct tttgctgtca gcagcatgtc tgcacagtgg gaattcagca
      241 ggatatccaa aaaagtatga ctatggtgtc gaccaaccag ctgtcctctc tggagtccag
      301 ggcagctcca tcgagatccc cttctccttc tacttcccct ggaatttgac caaggatcca
      361 cagatgagca tagcctggag atggaagaac ttccatgggg aattcatcta caactccacc
      421 cagcctttca ttcatgagca ttttaaggac cggctcatca tgaattggac acagggtcag
      481 acatctggtg tcctcagaat cctgaacttt aagaagaatg accaggccac atacttcggc
      541 cgagttcttc tgcaaacaac agaaggcatg aaggtgtggc agtcaatccc tggcaccaac
      601 ctcactgtga ccaataacac cagcaccccc gctacacttc caagcaccac cactgccaca
      661 ccttctacac acccccaaac cgtcacaaca gaaggcatga aggacgagcc aaagagtggc
      721 ctggatccac aaaccataat tgtgttggca gtggctgctg ctgtgttcct ggctggggtt
      781 ttgggattga cagtgttcct cgggtggagg agaaagcaag gccagaggac taaagcggaa
      841 accccagcca gggagccatt ggaaaacagt gagaaacgtg agagtattgg ccatgaagga
      901 caatatatgg atcccacaga gaaccccaag gataataaca tcgtgtatgc ctccatctcc
      961 ctctcaagcc cgacatcacc aggagcagca cctagcctgc ctgtccaaaa gaacccccag
     1021 gaagagaccg tgtactctac cataaaggcc aaatgagtgg gtctgggtga cactcttacg
     1081 gtgacttttg tttctggtgg gaagactccc agcttccact gacaacacag acagaaataa
     1141 actcacgggt cactgaaacc acaggcaaac acagaaattc gttcgtcaga gagtctgacc
     1201 acagagaaac tgagaaactc ccaagttccc ttttctaact tcctaagcct tcctcacaaa
     1261 agtaaacaga tacacagaat ctgcctactt agaagaatct aagaagagaa ttgatgtgac
     1321 ccttgacttc tggccctcta aggaccctcc tctatcactt ttctagcagc ccaagcaggg
     1381 gaatcctaaa tgctggcagc cagactccat gatgtgcacc ctcatctgtg actgtaataa
     1441 tcagctcggt gtgactgatt cccatgtacc actgcactgg acatcagccc aaatcctaga
     1501 tagacgatga ggccggaaac tcaaataaac cccaggtggc caaggtgttt gccaaaggcc
     1561 atgtagctcc caggaagttg tcaagccaga catgctttcc tagagatccc cccagctctg
     1621 ggtctcactg ctgtccccag cttccactat tctccagaga aggcagtttt ccatagtgac
     1681 acatacacag aaaaagcaca ctcagcagag taatctcaga gacctgcttt attaatacag
     1741 gccgcacagc tctgatttga actgtggagc aggtcaacaa caccaacatt taacagctga
     1801 ccaggaggac ggagatgctc tccctgcagc agacaacagc agggggacca caatactcta
     1861 ttcctcaaag agggctgcca gaaactcctc cgagctgccc ctctgctgca tctcccctct
     1921 ctcttctggc tctccaatgt cttccatgag ttgttccaag tccaggtcac tggaaccatc
     1981 atcgtcagga gggaaacttg ttgcaccctg tgtcaggggc acctggggct caagcccatc
     2041 ctttcccaat gtataaaccc catgctgagc tggtggggca gggcacttgg acacaatttt
     2101 aatttctttc tcctcagata agttgttgac tgaagccttg ttttcaggag ctttaaattt
     2161 tttcttaggg cctagagaga ataagggaca aagttaagag tcaacttatc ctgactttct
     2221 acaagccaga tttctgaatt gttttaaaca tatgacagga taacaccttt atcaaaacat
     2281 ggaatatggg ctttcaggtc acacttggat tctagccttg tgtcagctat atattcaata
     2341 tagatggcca ataaatttga aacctaagtc tcagta
//
