LOCUS       XM_039100184            1532 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC100910451
            (LOC100910451), transcript variant X1, mRNA.
ACCESSION   XM_039100184
VERSION     XM_039100184.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100184.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1532
                     /gene="LOC100910451"
                     /note="uncharacterized LOC100910451; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100910451"
                     /db_xref="RGD:6498758"
     CDS             454..1281
                     /gene="LOC100910451"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like isoform X1"
                     /protein_id="XP_038956112.1"
                     /db_xref="GeneID:100910451"
                     /db_xref="RGD:6498758"
                     /translation="MGVTTSRPSCTCCSCFSDCGARRLLRLLYFFQWNIQSVERDRTH
                     LEGEPNTKVVKGIVTSCGNDYGWIEDCVFFSTDVVIGAMPLQAGDKVLAYVEEDPVLH
                     ELKAKEVCICSEDNVPKGADSKIQDLSACVSHVKNDIIYMADEYHFHLDSITKAILGF
                     TPYEGDWLDIEYSVEQGSSKITVHSVKATKRRRLEEVCVTSIHRRKGMLNHTIFFTFD
                     SLHLPLGYTPLVGHMVNVVMVQSIRSNYNWRAISMTPVEQVVGVTGPGNLSSLFSCQ"
ORIGIN      
        1 ctaggcaatt aatggtcaat ttttattctg aatgcatact ggattttgct tgttcgccca
       61 gggacacatt tggggcaccg ggcctaagcc agagctctag tcctctcagc gaatgttgca
      121 ctaatctctt cccaacattc agagaacgcg ccaggcatca tcagatagtt catttatatc
      181 ttcttcctat ccccgggaca aaatgcatag aggatccatg tttctccgcc cgaagcttgc
      241 cattggccag aggagcatta tgagaacgtg ctctgccccc attggctgtt ctggaacaat
      301 gcccactggt taccaagctc tcaggagagg ctgtggaagg gactcctgtt gagctgccag
      361 ggtgctaaga tgagcctggc tgtccggagg gctgcccagt agccatctgg taccatttcc
      421 caggtttgag ggaagaaatc aagaggtggc accatgggtg tcacgacatc ccggccttcg
      481 tgcacctgct gcagctgttt ctctgactgt ggtgccaggc gtttactcag gctgttgtac
      541 ttcttccaat ggaatattca gtctgtggaa agagaccgaa cacaccttga aggcgaacca
      601 aacactaaag ttgtgaaggg catcgtgacc agttgcggga atgattacgg ctggattgaa
      661 gactgtgtct tcttcagcac tgacgttgta attggtgcca tgcccctgca agctggagac
      721 aaagtccttg catatgtgga ggaagaccca gtcttgcatg aattgaaagc caaagaagtt
      781 tgtatttgtt cagaagacaa tgtgcctaag ggagctgact ccaagatcca agatctatcg
      841 gcttgtgttt cccatgtgaa gaacgatatc atctacatgg ctgatgaata ccacttccat
      901 ctagacagca ttactaaagc catcttaggg tttacgcctt acgaagggga ctggctagat
      961 atcgagtact ctgtggagca aggatcttca aaaatcacag tacactcagt gaaggccaca
     1021 aaacggaggc gactggaaga ggtgtgtgtg accagtatcc acaggagaaa aggaatgttg
     1081 aaccacacca tcttcttcac cttcgactcc ctgcaccttc ctttgggata cacccctctc
     1141 gtaggccaca tggtcaacgt ggtgatggtt cagagcatcc ggtccaatta caactggaga
     1201 gcaatctcca tgaccccagt tgaacaagtc gtaggggtca ctggccctgg gaatctctcc
     1261 tcattatttt catgccaata gagggtccca gtcaacgcaa atgcttaagt taggaatttt
     1321 aaagaacatg ttaaccatga acttccaggt caagagcccg cctagatcca accagacggc
     1381 aagcatcaga gtggccaatg ggccatcttc ctctactaga ctgggaactt tctaatcgtc
     1441 atcttctgaa gaatcccaga aaaccccttg cagtgataga taacaaggac cgagttcgtg
     1501 ttgttatttt taataaatga agtttttgag ca
//
