LOCUS       XM_039097825            1527 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin specific peptidase 17-like
            a2 (Usp17la2), mRNA.
ACCESSION   XM_039097825
VERSION     XM_039097825.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1527
                     /gene="Usp17la2"
                     /note="ubiquitin specific peptidase 17-like a2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 Proteins"
                     /db_xref="GeneID:100910107"
                     /db_xref="RGD:6500127"
     CDS             16..1527
                     /gene="Usp17la2"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 17-like
                     protein D"
                     /protein_id="XP_038953753.1"
                     /db_xref="GeneID:100910107"
                     /db_xref="RGD:6500127"
                     /translation="MVTAPSFTEDPAMSPPATPELHQDEARVLEELSAKGKPSLSLQR
                     IQSPGSGLQNIGNSCYLNAVLQCLTHTPPLADYMLSQEHSQRCCYPEGCKMCAMEAHV
                     TQSLLHSHSGGVMKPSEILTSTFHKHRQEDAHEFLMFTLNAMHESCLRGCKQSETSSK
                     DSSLIYDIFGGQMRSQIKCHHCQGTLDSYDPFLNLFLDICSAQSVKQALEDLVKLEEL
                     QGDNAYYCGRCREKMPASKTTKVQTASKVLLLVLNRSYDFGGDKLNRVVSYPEYLDLQ
                     PYLSQPTAGPLPYALYAVLVHDGVTCSSGHYFCYVKASHGKWYKMDDSKVTRCDVSSV
                     LSEPAYLLFYVQQTDLEKVNVDVSVGRVHGVLHPESQQKKTRKKKHKRSSCTEAVHMP
                     RENRENTATKETSLGEGKVLQEQNHQKAGQNLKTTKVNLSANGTVIHQPRYTANWGRN
                     APDKDDQPGHSGDRLLTTQGSMNTGQLCGHGGSQRSKKRKNKNKQGQRPLLVY"
ORIGIN      
        1 cgggatcata gaaaaatggt gactgctccc tccttcacag aagatccagc catgtcacca
       61 cctgctaccc cagagctcca tcaagatgaa gcacgggtgc tagaggagct gtctgccaag
      121 gggaagccca gtctgagttt gcagaggatc caaagcccag ggtcagggct ccagaacata
      181 ggcaacagct gctacctgaa tgcagtcctg cagtgcttga cacacacacc acctcttgcc
      241 gactatatgc tgtcccagga gcattctcag aggtgttgtt acccagaagg ctgtaagatg
      301 tgtgctatgg aagctcatgt gacccagagt ctcctccact cccactcagg aggtgtcatg
      361 aaaccctccg agatattgac ctctaccttc cacaagcaca ggcaggaaga tgcccatgaa
      421 tttctcatgt tcaccttgaa tgccatgcat gaatcctgcc ttcgagggtg caagcaatca
      481 gaaacctcct ctaaggacag ctccctgatc tatgacatat ttggaggcca gatgagatct
      541 cagatcaagt gtcaccactg ccagggcacc ttagattcct acgatccctt cctgaacctc
      601 ttcctggata tctgctctgc tcagagtgtg aagcaagcct tggaggactt agtgaagcta
      661 gaagagttgc agggggacaa cgcctactac tgtggtaggt gtagagagaa gatgccagct
      721 tctaagacca cgaaggttca gactgcctca aaggttctcc tgctagtgtt aaaccgctcc
      781 tacgatttcg ggggtgacaa gttgaacagg gtagtaagct acccagagta ccttgacctg
      841 cagccatacc tgtcacagcc aactgcagga cccctgcctt atgctctcta tgccgtcctg
      901 gtccatgatg gggtgacttg ttccagtgga cattacttct gttatgtcaa agccagccat
      961 gggaagtggt ataagatgga tgattctaag gtcaccaggt gcgatgtgtc ctctgtcctg
     1021 agcgagcctg cctatctgct cttctatgtc cagcagactg accttgagaa ggtcaatgtt
     1081 gatgtgtctg tgggcagagt acatggggtt cttcaccctg aatcccagca gaagaaaacg
     1141 cggaagaaaa agcacaagag aagctcttgc acagaagctg tacacatgcc ccgagaaaac
     1201 agggaaaata cagccaccaa agaaacctcc ttaggggagg ggaaagtgct tcaggaacag
     1261 aaccaccaga aagctgggca gaacctcaag actaccaaag tcaatttgtc agccaacgga
     1321 actgtgattc atcagcccag atataccgca aactggggca ggaatgctcc agacaaggac
     1381 gatcaaccag ggcacagtgg tgacagactc ctcaccactc agggctccat gaacactggg
     1441 caactctgtg gtcatggagg gagccaaaga tctaagaaga ggaagaacaa gaacaaacaa
     1501 gggcagaggc ctctgcttgt ttactag
//
