LOCUS       XM_008771306            6916 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus prolow-density lipoprotein
            receptor-related protein 1-like (LOC100910088), transcript variant
            X1, mRNA.
ACCESSION   XM_008771306
VERSION     XM_008771306.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008771306.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008771306.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6916
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6916
                     /gene="LOC100910088"
                     /note="prolow-density lipoprotein receptor-related protein
                     1-like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910088"
                     /db_xref="RGD:6499975"
     CDS             249..6632
                     /gene="LOC100910088"
                     /codon_start=1
                     /product="prolow-density lipoprotein receptor-related
                     protein 1-like isoform X1"
                     /protein_id="XP_008769528.2"
                     /db_xref="GeneID:100910088"
                     /db_xref="RGD:6499975"
                     /translation="MRCRMLLLLFSLVLVFWGGSVGRSGAGELECNRTRQVACGEKCI
                     PIAWLCNGEQECPDGSDEQCEQTCLGHAQAWQCDNGKCIPASWLCDGASDCVDGSDEL
                     NCESLTVCPDYKIYCPGKALCLDAGEHCDAHQNCEDGSLKAHCPHARCLPGQWQCRNR
                     ACVMDSWRCDGIDHCGDASDEQGCASCPEGTVSCDGGKCIPESLMCDGRSDCMDGADE
                     PETCGKNCSLLNGGCEGPCSDTHWGVRCSCTPGWRLQPDGQRCEDVDECSLAYGPCGQ
                     LCHNTAGSYSCGCIQGHQLYNGTDCRVTDDDVKILIATDKELGILDRRTGIHEKLTPV
                     KSRPSSVAYDLNRNMYFWVDKVLNVFVFGKPNSVPLYPELPPVSSISLDWVTGQLYWA
                     SSSARVICAGLSDGRGYVKILEKDLVPEEIVVFPAKRYLYWVDRGKNGVKTIEAAGMD
                     GSDRKMLAVVTTEEPLGLTLDHVTGRLYWISGYKESIETVNVDGHGRHTFPRVFFQDE
                     DPVGLAVFENAFFWANQTQLIRASPRSPKEREVLLQASISAFLVLHKTQQPKSRHSAC
                     VPGSCSHLCLLSPIHPKGYKCVCPEGLFLLPSGTCSELKVVFSSGKRLYLLKVSSMGR
                     AIERTLVEEHAGNLYLLDIDWKRNFIYWSNAQGHLVYSSGYSGEKQEIWTQQTVCSAN
                     VDIATGNLFWVPCDRGTIHKTSMPGAESYILYSTRNIILQLLLDWPRRALYWVESGKP
                     LQSMTLDGKNRQEVWRGTWAADTRMALDLGSASILCTTKGLGLHSLSLLKNRTRSLNT
                     SWSDVLLVAHAPYLVTADKATLVLWNRKTLEPFSTMKETHIKKMIILVENQEVSDSPV
                     PDPGHKEPVPTAPSLPPVLCARSSVPCQDGKGCIPRESLCNGEDDCQDGSDEKNCFRV
                     CHQPGVFQCLDGSGCIEERYHCDGAEHCSDGSDELGCWRPADDCSLRCDNKTRCIPKS
                     WRCDGKPDCLDRRDEQGCLHEKCSSTEFQCESGQCVSSSLHCDGNRDCLDHSDEEGCP
                     VSWSLQCPEGEMKCPKSGECVLAEWICDHDVDCEDGADEKDCGLKVISCGPRQWACGS
                     GDQCVPDFWHCDGQSDCRDGSDEAGCAPQRCQDSEFQCATTGACLSFSMVCDGREDCA
                     DGSDEGGECSSSMCSPELCYHSCYQSPTGSVCACAPGFELESNGQICRDVNECQQPSG
                     QPCSQTCINTEGSYICACHPGYLLGSDGHTCKATGAEPILLVSIEFNLFLYGLRSLKE
                     DILATVDKNRVIYSVDYDLVDQKIFWAGPNAESIRWTSMATKKDGMVVQGIKPDCIGV
                     DWIGRNLYWTDGRAGQILAIQLTAVGKGKPEYTVVLDDDLIQPQSLALDPLNGLMYWS
                     EIGEEPRIEQAGMDGNSRKILVNQGLGRPTSIALDQLSWKIFWSDEKFHCIGSVNLDG
                     SGIRMMQLTQIQSPFSVAVFEDKVFWSDLQTRTIQSVEKMTGKDRAVLIKRSGQPFGL
                     KIMHEVLQPRSSSPCLDIGCSHLCLLSPQAKGSCRCPVGLLLADDGITCVSLQESGFV
                     FLVLPTVLTQIYLRNLKTTPSQTTVPEHRTLPFTSVKQLASVDYLVQEKALYLSELNT
                     SDIRLLRLRERGILSWQRVISVRGTVIDFALDWMSGNIYWIDTENPYINVAFSNGQYP
                     IVLLSENLYRPSSIVLHPPTAVMCLADLGLQDAGRHGSSIECASMDGSQRKVLWLKSP
                     VPVGLALSDSGTRVYWADTGQGLIQSIQLDGSRYRVDHQGLKGLHLFACGQDMMLWTT
                     VDDAQITRVWYNKAQVSENQWFQVDQKIVDLKVYSVLSQRGNNSCSKDNGGCSHICLP
                     NPEGRTCRCPRGYCLVEGHTCVEAVQCPPTLQCCKDGQRCISKEQICNGHVDCLDGSD
                     EVDCLNPGELHSTSILKKPEAWKRLIPEAFELSQATESTTDVYLGREEMRHPVKTTLT
                     TQMPASESKVPETKGRAETVQSKDLRTATHRPCSQDFCNGNGICIMEGKLRKCRCLVE
                     YGGEFCQEAARGPATGYIALGGVIAVSATLAVLGLFLHSRRERKFKRTSSKNLDYDKE
                     NNQEEENLMKSETFVNEVYDEQVSRRSRGGLSEEKGWRDRLLKSDCETSKLGE"
ORIGIN      
        1 acaacgtccc cagacacaat gcgaggagat cttcctggac agaggcggat cttgcccggg
       61 atagcgggcg cccaagattt gcaccagcga actccaggct ccaattcagc agtctgcaaa
      121 gaggcgtggg aactggcgcc cgcccgcgtt ccgtgtcccg cgccccttgc ctctcgctcc
      181 tcccttctgg gctgtcctca ctcaggcgcc cagcgggagc aagatcccac cgtctgttcc
      241 tcccaggcat gcggtgccgg atgctcttgc tccttttctc cttggtgctg gtattttggg
      301 gtggcagcgt cggacgctca ggggcaggtg aactagagtg taacaggaca aggcaagtgg
      361 cttgtggtga gaagtgcatc cctatagcct ggctctgcaa cggggagcaa gagtgcccag
      421 atgggagcga tgagcagtgt gagcaaacat gtcttggaca tgcgcaagcc tggcagtgtg
      481 acaatgggaa gtgtattcct gctagctggc tttgcgacgg tgccagtgac tgcgttgatg
      541 gctctgatga gcttaactgt gagagcttga cagtatgtcc agactacaaa atctactgtc
      601 caggaaaggc cctgtgtctg gatgccgggg aacattgcga tgcccatcag aactgtgaag
      661 acgggtccct aaaagctcac tgtccccacg cccgttgctt gcctgggcaa tggcagtgcc
      721 gaaacagggc atgtgtcatg gacagctgga ggtgtgatgg catcgatcac tgtggcgatg
      781 cctcagatga gcagggctgt gcgtcctgcc cagaaggtac ggtgagctgc gacggtggga
      841 aatgcatccc agagtctctg atgtgtgacg ggagatctga ctgtatggat ggcgctgatg
      901 agcccgagac ctgtggtaaa aactgctccc tgctgaatgg gggctgcgag ggcccatgca
      961 gtgataccca ctggggtgtc cgatgttcct gcaccccggg atggcggtta caacccgatg
     1021 gacagaggtg tgaagatgta gatgagtgct ctctggcgta tggtccttgt ggccagctat
     1081 gtcataacac agcaggctct tactcctgtg gctgtattca aggtcaccag ctctacaatg
     1141 gcacagactg tcgagttaca gatgatgatg ttaagattct tatagcaaca gataaagagc
     1201 ttggtatcct ggaccgaaga acaggcatcc atgagaagct gacccctgta aagtcaaggc
     1261 ccagttctgt tgcttatgac ctgaacagaa acatgtactt ctgggtggat aaagtcttga
     1321 atgtatttgt ctttgggaaa ccaaactctg ttcccctcta cccagaactt cctcctgtga
     1381 gcagtatttc tctggactgg gtcacaggac agttgtactg ggctagcagc tctgcaagag
     1441 tcatctgtgc tggcttaagt gacggcagag gctatgtcaa aatcttggag aaggatcttg
     1501 tgcctgagga gatagtggtg tttcctgcaa agaggtatct gtattgggta gatcgaggta
     1561 agaacggggt aaagactatt gaagctgcag gaatggatgg ctctgacagg aagatgctag
     1621 cagttgtgac cacagaggag cccctgggac tgacacttga tcatgtgact ggcagactct
     1681 actggatcag tggctataaa gagtccatag agacagtgaa cgtggatggc catggcagac
     1741 acacctttcc tcgggtattt ttccaagacg aagaccctgt tggcttggct gtatttgaaa
     1801 atgctttctt ctgggcaaat caaactcaac tgattcgtgc ctcacccaga agcccaaagg
     1861 agagagaggt gctgctccaa gcttccatat ccgctttctt agtcctccac aagacccagc
     1921 aaccgaaaag cagacactca gcgtgtgtcc caggttcttg cagccaccta tgcctcctgt
     1981 cccccatcca tcccaagggg tacaagtgtg tctgtccaga gggactgttt cttttgcctt
     2041 ctggtacctg cagtgagtta aaagttgtat tttcttctgg caaacgtctg tacttgctga
     2101 aagtcagctc tatgggacgt gctatagaga gaactctagt tgaagaacat gctgggaacc
     2161 tctatttact ggacattgat tggaagagga acttcatcta ttggtcaaat gcccagggac
     2221 atcttgttta ctcatctgga tattcaggag aaaagcaaga gatttggacc cagcaaacag
     2281 tctgttcagc taatgtggac atagccaccg ggaacctgtt ctgggtaccc tgtgaccgag
     2341 gtaccattca caagaccagt atgcctggtg ctgagtcata cattctctac agcactcgaa
     2401 acattatact gcaactgctt cttgattggc ccagaagggc gctgtactgg gtggagagtg
     2461 ggaagcctct acaaagcatg accctcgatg gcaaaaacag acaggaagtt tggagaggca
     2521 cctgggcagc agacactcgg atggctttgg accttgggtc tgctagcatc ctctgtacca
     2581 ccaaagggct tgggttgcac agtctcagtc tattaaagaa ccgaacacgc tcgttgaaca
     2641 catcctggag cgatgtgctt ctggtggccc atgcacctta cctggtgact gcagacaagg
     2701 caactcttgt gctgtggaac aggaagacgc tggagccctt ctccacaatg aaggagacac
     2761 acataaagaa aatgatcatc ttggtggaga accaggaggt ttcggattct ccagtgccag
     2821 atcctgggca taaggaacca gtgcccactg ccccttccct tcctcctgtt ctctgtgccc
     2881 ggtcctctgt cccctgccag gatgggaagg gatgcattcc cagggagtcc ctctgcaatg
     2941 gtgaggatga ctgtcaggat ggctcagatg aaaaaaactg ttttcgggtc tgccatcaac
     3001 caggcgtctt ccagtgtctg gatggaagcg ggtgcataga ggagcgatat cactgtgatg
     3061 gggctgagca ttgctccgat gggtctgatg agttgggctg ctggaggcct gctgatgact
     3121 gctcactgcg ctgtgacaac aagacccgct gtatccctaa gagttggaga tgtgatggga
     3181 agccagactg tttggacaga agagatgaac aaggatgcct tcatgaaaaa tgcagttcca
     3241 ctgaattcca atgtgagagc ggccagtgcg tgtcttcttc tctgcattgt gatgggaacc
     3301 gagactgcct ggaccattca gatgaagaag gctgccccgt ttcctggtcc ctacagtgcc
     3361 cagaagggga gatgaagtgc ccgaagagtg gagagtgtgt gctggcagag tggatatgtg
     3421 accatgatgt ggactgtgaa gatggagccg acgagaagga ttgtggcctc aaggtgatct
     3481 catgtggccc aaggcagtgg gcttgtggca gtggagacca gtgtgtgcct gacttctggc
     3541 actgtgacgg acagagtgac tgcagagatg gcagtgatga ggctggatgt gctccacaga
     3601 ggtgccagga ttccgagttc cagtgtgcta ctactggtgc ctgcctcagc ttcagcatgg
     3661 tgtgtgacgg gcgagaggac tgtgcagatg gttcagatga gggtggggag tgttcctcat
     3721 caatgtgcag ccccgaacta tgttaccact cttgctacca gtccccaact gggtcggtat
     3781 gtgcttgtgc cccaggcttt gagctggaga gcaatgggca aatctgtcgg gatgtaaatg
     3841 agtgccagca gccatctggt caaccttgca gtcagacctg tatcaatact gagggctcat
     3901 acatctgtgc ctgtcaccct ggctacttgc tgggctctga tggccacact tgtaaggcaa
     3961 caggtgctga gccaatcctg cttgtttcga ttgagtttaa cctatttctt tatggactga
     4021 gaagcttaaa agaagatatc ctggcaactg tagacaagaa ccgggttatt tactctgtgg
     4081 actatgactt agtggatcag aaaatcttct gggccggtcc caatgcagaa agtataaggt
     4141 ggacaagtat ggccacgaag aaagatggga tggtggtgca agggataaag ccagactgta
     4201 taggggttga ctggattgga agaaatctct actggactga tgggagagct ggccagattt
     4261 tggcaattca gttaactgct gttgggaaag gaaaacctga gtacacagtt gtcttggatg
     4321 atgacctgat tcagccccag tctttggctt tggatccctt aaatggattg atgtactggt
     4381 ctgaaattgg ggaggagcct cgaatagaac aagctggcat ggacggaaac agccgaaaga
     4441 tacttgtcaa tcaaggcctt ggccgaccaa ccagcatagc tcttgaccag ttaagttgga
     4501 agatattctg gtccgatgag aaatttcact gcattggctc tgtcaaccta gatggtagtg
     4561 gcattcgtat gatgcagcta acacaaatcc agagcccctt ttcagtcgct gtgtttgaag
     4621 ataaagtctt ctggtctgac cttcagacaa gaacaataca gtctgtggag aagatgacag
     4681 gcaaggacag ggctgtcctc atcaagcgtt cgggacagcc ctttggactc aaaataatgc
     4741 atgaagtcct ccagcccagg tcttctagtc cttgtctgga cataggatgt tctcacttgt
     4801 gccttctgag cccacaagcc aagggaagct gccgttgtcc agttggcctc ctgctggcag
     4861 atgatggaat cacttgtgtg tctctccagg agtctgggtt tgtgttcctg gtattgccca
     4921 ctgttctcac ccagatctat ctgagaaatc ttaagactac tccatcacaa acaactgtgc
     4981 cagaacacag aacacttccc tttaccagtg tcaagcagct ggcatcagtg gattatcttg
     5041 tccaggaaaa ggccctctac ctgtcagagc tgaacaccag tgacatcagg ctactgaggc
     5101 tgagagaacg agggatactg tcatggcaga gagtcatctc tgtgaggggg acagtgatag
     5161 actttgcctt ggactggatg agtgggaata tatactggat cgacactgag aatccctaca
     5221 tcaacgttgc tttctccaat ggccagtatc ccattgtttt gctcagtgaa aacctttacc
     5281 gcccatcgtc tattgtcctc cacccaccta ccgcagtcat gtgcttggca gacttgggtt
     5341 tgcaggatgc cgggagacat ggctccagca tcgaatgtgc ctctatggat ggcagccaga
     5401 gaaaagtgct atggctgaaa tccccagtcc ctgtgggtct ggctctctca gattcaggga
     5461 cccgagtata ctgggcagat actgggcagg gacttataca aagtattcaa ctcgatggct
     5521 caagatacag agtagaccac caaggactta agggtcttca cctctttgca tgtggtcaag
     5581 acatgatgtt gtggacaacg gttgatgatg ctcagatcac cagagtttgg tacaacaaag
     5641 cacaagtctc agaaaaccag tggttccaag tggaccagaa gattgtagac ttaaaagtgt
     5701 atagtgtcct tagtcaacgg ggtaacaaca gctgttcaaa agacaatgga ggatgcagtc
     5761 atatctgttt accaaatccc gagggcagga cttgccggtg tccccgtggg tactgcttgg
     5821 ttgagggcca cacctgtgtg gaagctgtcc agtgccctcc gacgttgcaa tgctgtaagg
     5881 atggtcaaag gtgcatttcc aaggagcaaa tttgcaatgg tcatgttgac tgtctggatg
     5941 gctctgatga agtggactgt ttaaatccag gtgaactcca ttccacatca atacttaaga
     6001 agccagaagc ttggaaaagg ttgataccag aagctttcga actttcccag gctactgagt
     6061 ctaccacgga tgtatatctg ggacgagaag aaatgagaca tcctgtcaag acaacactaa
     6121 ccactcaaat gcctgcatca gagagcaagg ttccagaaac caagggaaga gcggaaactg
     6181 ttcaatccaa ggacttacgg acagcgacac acaggccctg tagccaggac ttttgcaacg
     6241 ggaatgggat ctgcataatg gaaggaaagt tgagaaaatg ccgctgcctg gtcgagtatg
     6301 gtggagagtt ctgccaagaa gcagcccgtg gccctgccac tggctacata gccctgggcg
     6361 gagtcattgc tgtttcagct accctggcag ttttggggct gttcctacat tccagaagag
     6421 aacgtaaatt caagagaaca tcatcaaaaa atttggacta tgataaagaa aataaccaag
     6481 aggaagaaaa tctaatgaag agtgagactt ttgtcaacga agtctatgat gagcaggtaa
     6541 gccgcaggag ccggggaggt ttatctgagg aaaaggggtg gcgggatagg ctattaaaaa
     6601 gtgattgtga aacatctaag ctgggtgaat gaggctgtaa cttatattaa acttttgctt
     6661 acacagtctt tggtcattag ctctgatttg gcgaattaaa ataaaacatg catgaaatag
     6721 tggcctagac atttcagtag catgcacacg gggctaatga tattgggagt agggtgggct
     6781 gctgttagga ttagagttac cccccaaaac tcaggtaccc aatccccatg aactctacta
     6841 acgtccttaa gttccaccaa tggattttct tggtttgtac aaagacagtg ttatgttctc
     6901 taacttcaac tctctc
//
