LOCUS       XM_008769504            1124 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tyrosine-protein phosphatase
            non-receptor type substrate 1-like (LOC100909964), transcript
            variant X1, mRNA.
ACCESSION   XM_008769504
VERSION     XM_008769504.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769504.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769504.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1124
                     /gene="LOC100909964"
                     /note="tyrosine-protein phosphatase non-receptor type
                     substrate 1-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 54 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100909964"
                     /db_xref="RGD:6500592"
     CDS             78..1004
                     /gene="LOC100909964"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     substrate 1 isoform X1"
                     /protein_id="XP_008767726.1"
                     /db_xref="GeneID:100909964"
                     /db_xref="RGD:6500592"
                     /translation="MLLLHSSAHILHSALLLILLLELKGADMKELKVIQPQKLVSVYD
                     GGSVILNCTVTSLTPVGPTRWFKGEGQNRQLIYSFRGDYFPRITNIADVTKRNNTDFS
                     IRISNIMLADAGTYYCVKFQKGTVEPDIEIQSGGGTELFVYGADMKKLKVVQPEKLIS
                     VDAGESVTLNCTVTSIIPMGPIKWFRGAQHSRHLIFNFTGGYFPRVTNVSDSSKRNNL
                     DFSIRISNVMPADAGTYYCVKFQKELLETDIEIQSGGGTELLVFEPKTSGIAKILAAA
                     LLGYKLMLRISMEIDLDEKPLKTAHKDTIRTT"
ORIGIN      
        1 cttcctttct ctacgtttaa gaaactggga cctcatgaga actgattctg accacaaaag
       61 gttccttaac cccaacaatg cttctcctac attcctcggc ccacatactt cacagtgccc
      121 tgctcttgat cctgcttctg gaacttaaag gagcagatat gaaagagcta aaggtgatcc
      181 agcctcagaa attagtttct gtttatgatg gagggtcagt tattctgaat tgcacagtga
      241 catctctcac ccctgtgggg cccacgaggt ggttcaaggg tgaaggacaa aatagacaac
      301 tgatatatag tttcagagga gactatttcc ccagaataac aaatattgca gatgttacaa
      361 agagaaacaa cacggacttt tccatccgca tcagtaatat tatgcttgct gatgcgggta
      421 cctactactg tgtgaagttc cagaaaggaa cagtagagcc tgacattgag attcagtctg
      481 gaggtggcac tgagttgttt gtgtatggag cagatatgaa aaagctgaag gtggtccagc
      541 ctgaaaagtt aatttctgtt gatgctggag aatcagtcac tctgaattgc acagtgacat
      601 ctatcatccc tatggggccc attaagtggt tcaggggtgc acaacacagt aggcacctga
      661 tatttaattt cacaggagga tatttcccca gagtaacaaa tgtttcagat tcttcaaaga
      721 gaaacaacct ggacttttcc attcgcatca gtaatgttat gccggctgat gcaggtacct
      781 actactgtgt gaagttccag aaagaattat tagagactga cattgagatt cagtctggag
      841 gtggcactga gttgttagta tttgaaccaa aaacatcagg cattgctaaa atccttgcag
      901 ctgcacttct tggatacaaa ctaatgctga gaatcagcat ggaaatagat cttgatgaga
      961 agccactgaa gactgctcat aaagacacaa ttaggacaac ttgaattcaa aatttctggt
     1021 tgttcctctg catatgtatc attgtccccc agctttagtg ctgtgcatat tgagttgtat
     1081 tctagatact tttattttca ttattaaaag aatttaaatg tgta
//
