LOCUS       XM_039092542            1657 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus putative PRAME family member 24-like
            (LOC100909497), transcript variant X1, mRNA.
ACCESSION   XM_039092542
VERSION     XM_039092542.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092542.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1657
                     /gene="LOC100909497"
                     /note="putative PRAME family member 24-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 Proteins, and 81% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100909497"
                     /db_xref="RGD:6503293"
     CDS             1..1446
                     /gene="LOC100909497"
                     /codon_start=1
                     /product="PRAME family member 8-like isoform X1"
                     /protein_id="XP_038948470.1"
                     /db_xref="GeneID:100909497"
                     /db_xref="RGD:6503293"
                     /translation="MSVQSPPTLQKLARQTLLRNEAVIISSLEELPTVLFPALFKEAF
                     EGRHSKLVKEMVTTWPFPCLPVGALMKTPNLETLQAVLEGVDMRLTRDIHHSKGKLQV
                     LDLRNVHHTFWNIWADEEDGSCSSESLDENPVVKVLPQYALRHKLKVVTELCLRPRLD
                     EAQACFLKWAQQRKGFLHFCCTKLKIWAMPMDFIREILNVFHPENIEELELNTEWNVF
                     QLAHFTPFFGQMRNLRKLLLAPLYKNVFKIANRTGEREDKCVKGFISMFSKFNCLQHL
                     SLSGVHFLRDHMNQVFRSLMTPLVKLSIMHYRISQKDLDSFSFCQSLFHLKHLEMRGV
                     TLSSLDIMPLRSLVEKVADKIQTLDLQGCRMKDYQLNALLPALTRCSQLTKINFYNND
                     FSMAILKDFLQHTANWRKINVEQYPAPLECYDELAHVCRERFAQLCLELMDTLGTIRQ
                     LKSISFATNMCHKCGMQCVYGRENRTCSCRL"
ORIGIN      
        1 atgagtgttc agagcccacc cacactccag aagctggcaa ggcagactct gctgagaaat
       61 gaggctgtga tcatatcctc tctggaggag ctgcctacag tgctcttccc agcattgttc
      121 aaggaggcct tcgagggcag gcacagcaag cttgtgaagg aaatggtgac aacttggcct
      181 ttcccctgtc tccctgttgg ggcattgatg aagacaccta acttggaaac cttgcaggct
      241 gtcctagaag gtgtagacat gcgactgaca agagatattc accacagcaa gggaaaactt
      301 caggttctgg acctgaggaa tgtgcaccac actttctgga acatatgggc tgatgaagag
      361 gatggcagct gttcttcaga gtccttggat gaaaatccgg tagtgaaggt ccttccccaa
      421 tatgcactga ggcacaaact gaaggtggta actgagctgt gcctcaggcc ccgtcttgat
      481 gaagcacaag catgcttctt gaagtgggcc cagcagagaa agggcttcct gcatttctgc
      541 tgtacgaagc tgaagatctg ggctatgcct atggacttta tcagagagat cttgaatgtc
      601 tttcacccag agaacatcga ggaattggaa ctgaacactg agtggaatgt cttccagctg
      661 gcccatttta ctcccttctt tgggcaaatg agaaatcttc gcaaactgct cctggcaccc
      721 ctctacaaga atgtattcaa gattgccaat agaacaggag agagagagga caagtgtgtc
      781 aagggtttca tttctatgtt ctcaaaattc aattgtctcc agcatctctc cttgagtggc
      841 gtccattttc ttagagacca catgaatcag gtcttcagga gcctgatgac acccttggtg
      901 aaactctcca tcatgcacta ccgaatttca cagaaagact tggattcctt ctccttctgt
      961 cagagcctct ttcaccttaa acatctggag atgagaggtg tgaccctaag ttctttggat
     1021 attatgcctc tgagaagtct cgtggagaaa gtggcagata aaattcagac tctggatttg
     1081 caggggtgta gaatgaaaga ctaccagctc aatgccctcc tacctgccct cacacgatgc
     1141 tctcagctca ccaagattaa cttctacaac aatgacttct ccatggccat cctaaaggac
     1201 tttttgcagc acactgccaa ctggagaaaa atcaatgtgg aacaataccc tgcccctctg
     1261 gagtgctatg atgagttagc tcatgtctgc agagaaaggt ttgcccaact ttgtctggag
     1321 ctcatggata cacttgggac aataaggcag ctcaagagca tttcttttgc tacaaatatg
     1381 tgccacaaat gtggtatgca gtgtgtctat ggacgggaga acagaacttg tagttgccgg
     1441 ctgtaaactt gggtacatga ctactagata tgaataaatg acaggatcct gacacaactc
     1501 tcacctgggg tgctcactga ttgtgatttc agacactgtt tagatggttg aaaacaaaaa
     1561 tcatgtacag agactgggat cttggaagct aagcttgaaa agggaaactg tctgatggac
     1621 tgtgggaaca ggggccttgt ggagtcagaa acacaac
//
