LOCUS       XM_039100352            2898 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus putative SMEK homolog 3-like
            (LOC100909486), mRNA.
ACCESSION   XM_039100352
VERSION     XM_039100352.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100352.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2898
                     /gene="LOC100909486"
                     /note="putative SMEK homolog 3-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100909486"
                     /db_xref="RGD:6503220"
     CDS             160..2547
                     /gene="LOC100909486"
                     /codon_start=1
                     /product="protein PPP4R3C-like"
                     /protein_id="XP_038956280.1"
                     /db_xref="GeneID:100909486"
                     /db_xref="RGD:6503220"
                     /translation="MPDINMDYKLYSVKVYVMVEDKQWKDIGTGQISSKYIEWHQGAC
                     LLVHSELDGSPIMECKILPNVPYQKQGEVIIWSEAKNHGMAIHFLEPKGCQEIWEDIC
                     QVQGKDPKVEITQDLTDDLESFEDLSLSWKRVEMSNYELDTLKNIAELFPFVFEMPNH
                     KERLAVVLENEGYIKKLLQLFKTCEKLKNMEGLYYLHNIIKGILFLNDTHLFNIMFSD
                     EFFMDVVGCLEYDPALDQPKKYRQFLTQNAKFKEVMPITHSQLRKKIQETYRMQYIHD
                     IVLPTPSIFEGNLLSDLTTMIFFNKIEIITMLQEDEHFLLEIFAQLKDNTVGDERRHE
                     LLLFFKEFCAFAKTLHSQKKNMLLKTLIKLGIMSALKVVVHMHDYQIQVAALELFACL
                     VEYSPRLVRAYAMQEAQNSEDNDDLLLNIMINQMICDSDPEFSRGIILTAVLHDLLNP
                     ENMRVTVNGYERKGFLNFFYKRCMRNLIAPILSTTVENDSNDNRGYICPDNYQNAQLL
                     GAILEILTFCVQNHSMYIKHYIMSNNLLSRILVLMSSKHTFLILCAVRFMRKMIGLKD
                     KIYSLYIIKENLFEPVVNAFMYNGHRYNMLNSAIIELFEFIRKENIKSLIANIVEKFF
                     MAFESIEYVQTFKGLKTKYEEEKKKSRTRRNLPNIIYSKIYCGHTKDIELKGKADTSC
                     RRITEEEEEEEGGEEGILPMGSNFTGKCDIFMEIKGKNESENKIERTKRKSSEAFENF
                     PSNGDAFPKRMGQSHCSSLVSLVDYPYDSDGEDDYDPYSNDEDEEPPEKMPNLST"
ORIGIN      
        1 caagattcct ccataaccaa ggcaggctca gagactcagg tggtcctgag acagaattgt
       61 gactgcagca gcgattctgg ccaaggtagc aagggatagc aacttctggc cagaatacaa
      121 aaagccaagg tctgttcaag gacgttgcct agtgaggtaa tgccagatat caacatggac
      181 tacaaacttt atagcgtaaa agtctatgtc atggtggaag acaagcagtg gaaagacata
      241 ggcactggac aaatttcatc caaatatatc gaatggcacc agggtgcatg cctgcttgtt
      301 cactcagaat tagatgggtc accaattatg gagtgtaaga tacttccgaa cgtcccctat
      361 cagaaacaag gggaggtaat catttggtct gaagctaaga accatggcat ggcaatacat
      421 ttcctggaac caaaaggttg tcaagagatc tgggaagaca tctgccaagt tcaaggtaaa
      481 gatccaaagg tagaaatcac acaagatctt actgatgatt tagaaagttt tgaagatctg
      541 tcactaagct ggaaacgggt tgagatgtca aactatgaac tcgataccct taaaaacatt
      601 gcagagttat ttccttttgt ctttgaaatg cccaaccaca aggaaaggct ggcagtggtc
      661 ttagaaaatg aaggttacat taaaaaattg ctacagcttt tcaaaacttg tgaaaaattg
      721 aagaacatgg aaggcttata ctatttgcat aacatcatta aaggaatcct gtttctaaat
      781 gatacacatt tatttaacat catgttttct gatgaatttt ttatggatgt ggtaggatgc
      841 ctagaatatg accctgcttt ggatcagcca aagaagtaca ggcaattctt gactcaaaat
      901 gctaaattca aggaagttat gccaataaca cactcccaac ttaggaaaaa aatacaagag
      961 acctacagaa tgcaatatat tcatgatatt gtgttgccta caccatccat atttgaaggg
     1021 aatcttcttt ctgatcttac cactatgatt tttttcaaca aaattgaaat aattaccatg
     1081 ctgcaagaag atgaacattt tctgctcgaa atttttgctc agttaaaaga taacactgta
     1141 ggtgatgaaa gacgacatga attgttatta tttttcaagg aattctgtgc atttgctaag
     1201 acattacact ctcaaaagaa aaatatgtta ttgaaaacac taataaagct aggaatcatg
     1261 agtgctctga aagttgtagt acacatgcat gattaccaaa tacaagtagc tgctttagaa
     1321 ctatttgctt gtctggtaga gtatagtcca cgcctagtcc gagcttatgc aatgcaagaa
     1381 gctcagaaca gtgaagataa tgatgacctt ctccttaata taatgatcaa ccaaatgatc
     1441 tgtgattctg atcctgaatt ttcacgaggc atcattttga cagcagttct tcatgatctt
     1501 cttaatccag aaaatatgcg tgtcacagtt aatggatatg aaagaaaggg atttctgaat
     1561 ttcttctata aacgttgcat gaggaacctt atagcaccaa ttttgtctac aacagtagaa
     1621 aatgatagca atgataatag gggttacatc tgccctgata attatcaaaa tgcacaattg
     1681 cttggagcga ttttagaaat actcacattt tgtgtgcaaa accactcaat gtacataaaa
     1741 cattatatta tgagcaacaa cttgctcagc agaatcttgg tgctgatgag ttcaaagcac
     1801 acatttctga ttttgtgtgc tgtccgtttt atgagaaaaa tgattggcct taaagacaaa
     1861 atttacagtt tgtacataat taaggaaaat ctgtttgaac cagttgtaaa tgcttttatg
     1921 tataatggac atcggtacaa tatgttaaat tcagctatta ttgagctatt tgaatttata
     1981 agaaaagaaa acatcaagtc tctcattgca aacattgtgg aaaaattttt tatggctttt
     2041 gaatcaattg aatatgtcca gacctttaaa ggtttgaaaa ctaagtatga agaggagaag
     2101 aaaaaaagtc gaacaagaag gaatttacct aatataatat actcaaaaat atactgtgga
     2161 catacaaaag atatagagtt aaaaggcaag gcagacacaa gttgtagaag aatcacggag
     2221 gaggaggagg aggaggaggg gggagaagaa ggtattctac caatgggaag taactttaca
     2281 ggtaaatgtg acatatttat ggaaattaaa ggcaaaaatg aaagtgaaaa caaaatagaa
     2341 cggaccaaac gaaaatcatc tgaagccttt gaaaattttc catctaatgg tgatgctttt
     2401 cctaaaagaa tgggtcagtc acattgtagc agccttgttt ctttggtgga ttacccatat
     2461 gattctgatg gtgaggatga ttatgatcca tatagtaatg atgaagatga agagcccccc
     2521 gaaaaaatgc ctaatctcag tacatgaaat actgtgaggc ccttaactcc aagttcaaat
     2581 acaaatttat aaatattaca aactgaaaaa tcgaatttaa aacaactttc ttgtatgact
     2641 ttcagatact acagaattca aaggaaaagt aatgaataaa gagcctcaaa tttatataaa
     2701 gaaaacttcc tgtaatatag acacatagta caaaataaac tgtagctgag tgataacttt
     2761 tagtcaagaa catcttcagc agcatggttt gggaggaaga gtgtttgata aattaataca
     2821 attttttgct aaattattta tattagaagt aactccaaag gtttcattgc aaagaacact
     2881 ttcaaaaagg ggtttatc
//
