LOCUS       XM_039100808            1494 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus eukaryotic translation initiation
            factor 3, subunit 6 48kDa-like (LOC100365062), mRNA.
ACCESSION   XM_039100808
VERSION     XM_039100808.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100808.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1494
                     /gene="LOC100365062"
                     /note="eukaryotic translation initiation factor 3, subunit
                     6 48kDa-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 ESTs, 31 long SRA reads,
                     16 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100365062"
                     /db_xref="RGD:2319808"
     CDS             15..1352
                     /gene="LOC100365062"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 3
                     subunit E-like"
                     /protein_id="XP_038956736.1"
                     /db_xref="GeneID:100365062"
                     /db_xref="RGD:2319808"
                     /translation="MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDL
                     LSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTR
                     QMQSTRDGRMLFDYLADKHGFRQEYLDMLYRYAKFQYECGNYSGAAEYLYFFRVLVPA
                     TDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWS
                     LFVFFNHPKGRDNIIDLFLYQPQYFNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKD
                     LVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIE
                     NARLFIFETFCRIHQCISSNMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVV
                     MGNNAVSPYQQVIEKTKGLSFRSQMLAMNIEKKLNQNSRSEAPNWATQDSGFY"
ORIGIN      
        1 tttcccccgg caagatggcg gagtacgact tgactactcg catcgcacac tttctggatc
       61 gacacctggt ctttccgctt cttgagtttc tctctgtgaa agagatttat aatgagaaag
      121 aattattaca aggaaaattg gatcttctta gtgataccaa tatggtggac tttgctatgg
      181 atgtttacaa aaacctttat tccgatgata ttccccatgc tctgagagaa aaaagaacca
      241 cagttgttgc acagctgaaa caactccagg cagaaacaga gccaattgtg aagatgtttg
      301 aagatccaga aactacaagg cagatgcagt caaccaggga tggccggatg ttgtttgact
      361 acctggcaga caagcatggg tttaggcagg agtacttaga tatgctctac agatacgcaa
      421 aattccaata tgagtgtgga aattactctg gagcagcaga gtatctttac ttctttagag
      481 ttttggttcc agcaacagat agaaatgctt taagttcact ctggggaaaa ctggcctctg
      541 aaatattaat gcagaattgg gatgcagcca tggaagacct tactcgatta aaagagacca
      601 tagacaataa ttctgtgagt tctccactcc agtctcttca gcagcgaaca tggctcattc
      661 actggtctct gtttgttttt ttcaaccatc caaaaggccg tgataatatt attgatctct
      721 tcctttacca accacagtac tttaatgcaa ttcagacaat gtgtccacat attctccgct
      781 atttgaccac tgccgtcata accaacaaag atgtgcggaa acgccggcag gtgctgaaag
      841 acctagtgaa agttattcaa caggagtctt acacatataa agacccaatt acagaatttg
      901 ttgaatgcct atatgttaac tttgattttg atggagctca gaaaaagcta agagaatgtg
      961 aatcagtgct tgtgaatgac ttcttcctgg tagcatgtct tgaggacttc attgagaatg
     1021 cccgtctctt catatttgag actttctgtc gtatccacca gtgtatcagc agtaatatgc
     1081 tagcagataa actgaatatg actccagaag aagctgaaag atggattgtg aatttgatta
     1141 gaaatgcgag gttggatgcc aagattgatt ctaaactagg tcatgtggta atgggcaaca
     1201 atgcagtctc accctaccag caagtgattg aaaagactaa aggtctttct tttagaagcc
     1261 aaatgttggc catgaatatc gaaaagaaac ttaatcagaa cagtagatca gaggctccca
     1321 actgggcaac ccaagattct ggcttctatt aaaggattat aaagaagaaa aaggaatcag
     1381 tggaagacac agtaaccatt atgtataaaa gacgacgtac atttttagaa gcaattaaca
     1441 tgtttgctaa aaattttgga aatttgaata aaattggcta tgattcattt tttt
//
