LOCUS       XM_003751853            3706 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cold shock domain-containing protein
            E1-like (LOC100364335), mRNA.
ACCESSION   XM_003751853
VERSION     XM_003751853.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003751853.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003751853.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 16 indels
            internal stop codons :: corrected 9 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-627               JACYVU010000244.1  9198204-9198830
            628-628             "N"                1-1
            629-909             JACYVU010000244.1  9198831-9199111
            910-911             "NN"               1-2
            912-1197            JACYVU010000244.1  9199112-9199397
            1198-1632           JACYVU010000244.1  9199399-9199833
            1633-1633           "N"                1-1
            1634-1740           JACYVU010000244.1  9199834-9199940
            1741-1791           JACYVU010000244.1  9199942-9199992
            1792-1959           JACYVU010000244.1  9199994-9200161
            1960-1960           "N"                1-1
            1961-2046           JACYVU010000244.1  9200162-9200247
            2047-2048           "NN"               1-2
            2049-2178           JACYVU010000244.1  9200248-9200377
            2179-2179           "N"                1-1
            2180-2253           JACYVU010000244.1  9200378-9200451
            2254-2255           "NN"               1-2
            2256-2304           JACYVU010000244.1  9200452-9200500
            2305-2306           "NN"               1-2
            2307-2463           JACYVU010000244.1  9200501-9200657
            2464-2465           "NN"               1-2
            2466-2565           JACYVU010000244.1  9200658-9200757
            2566-2566           "N"                1-1
            2567-2622           JACYVU010000244.1  9200758-9200813
            2623-2623           "N"                1-1
            2624-2721           JACYVU010000244.1  9200814-9200911
            2722-2808           JACYVU010000244.1  9200913-9200999
            2809-2810           "NN"               1-2
            2811-3706           JACYVU010000244.1  9201000-9201895
FEATURES             Location/Qualifiers
     source          1..3706
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3706
                     /gene="LOC100364335"
                     /note="cold shock domain-containing protein E1-like; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 18 bases in 12 codons; deleted 4
                     bases in 4 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 Proteins, and 66%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100364335"
                     /db_xref="RGD:2321223"
     CDS             577..2871
                     /gene="LOC100364335"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 18 bases in 12
                     codons; deleted 4 bases in 4 codons; substituted 9 bases
                     at 9 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:1051..1053,aa:OTHER)
                     /transl_except=(pos:1201..1203,aa:OTHER)
                     /transl_except=(pos:1204..1206,aa:OTHER)
                     /transl_except=(pos:1210..1212,aa:OTHER)
                     /transl_except=(pos:1216..1218,aa:OTHER)
                     /transl_except=(pos:1555..1557,aa:OTHER)
                     /transl_except=(pos:1567..1569,aa:OTHER)
                     /transl_except=(pos:1573..1575,aa:OTHER)
                     /transl_except=(pos:2113..2115,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: cold shock
                     domain-containing protein E1"
                     /protein_id="XP_003751901.2"
                     /db_xref="GeneID:100364335"
                     /db_xref="RGD:2321223"
                     /translation="MSFDPNLLHNGHNRYPMXTSAALHETGVIEKLLTSYRFIQCSEW
                     QARLFFYCSQYNGNRQDLKVGDVEFEVSSDQRTGKPIAIKLVKIKPEIHPEEPVNGQV
                     VCTVPHNLVXSPAALGQSLTGSVCYEHNGEVFYLTYTSEDVEGNVKLETGDKINFNXN
                     NKHIGTVSAHNIMLLKKKQACYQEVVCAMKEVFGFIERGAVVKEISFLXXIXRXSRNE
                     FKGDLETLHPGDEVEFTTKERNGKEVATDVRLLPQGTVIFEDISIEHFEGTVSKVIPK
                     VPNKNQNDPLPGQIKVDFVIPKELPFGDKGTKSKVTPLEGDHVRFNISTDXRDKXEXA
                     TNIEVLSNTFQFTDEFRDXGVDFIKCVDCDARMFLHLSEILDGNQLHIAHEVEFTVVP
                     DLLSAQRNHAIRIKKLSKGMVSFHSHSDHFLSTKEKEATFSNPKTPSPNKGKDKEAED
                     GIIVYGDCVVKXIVFQAKDVEGSTSPQIGKVEFSINDKQRXHSNSKRLLGYAATLKDN
                     SDFIXTASHVKEIFFHYIEFSGGVDSXELEDMVEYSLSKGKGDKVSAEKVNXHSVNGS
                     TEGTNPTIYSXCPMRGVDPTQTEYQGMTEIVEEGDMKGEVHPFGIVGIANKGDCLQKG
                     ENVKFXSCVLGQNAQIMAYNIIPLCRATVECVKDQFGFIXVGDSKLSFHVKEVQDDIE
                     XQVEFSVVLNQRTGKCSAWNVWQVCDGPKADAAPQPDQLVNCLKNITLDDVNAPCLMI
                     LHQLXDNSMGFGAERKIHQAGVID"
ORIGIN      
        1 aaacaggctg agaaagaaat tagggaaaca actcccttca caataggcac agataatata
       61 aaatatcttg gggtaactct aaccaaacat gtgaaagatc tttatgataa gaacttcaag
      121 tctcggcaag agaagtgaca tatattccta tgtaccgggc tgtgctgctt atggtggtgc
      181 tggagagggg gcactgagct gttgggtatg aagtgtaatg gaacagactt taccacctga
      241 aactgctgct tcaagttcaa atcaggcaag caacagaccc gcaacaacca aagaaaagta
      301 cacaagttga agacacaaca cttgctctga aacaagaagt ttgtgcctac tcaacagctt
      361 tgaaagagca cttcccaaca ctgctagtag tctttgtttt cttcagtgct gtactgtgag
      421 attgcccagt gcagcagcag ttgtattctt tattagcttg gtagatcatt tcctctcact
      481 ttttttttaa atactagcaa ctttgttttg tgatgaaaac aaaagtaggg tcagcaaata
      541 ctactgaaaa gtgcaatatt tgattatcac tgcaagatga gctttgatcc aaaccttctc
      601 cacaacggac acaataggta cccaatgntt acttcggcag cactccatga gactggggtt
      661 attgaaaaac tgttgacctc ttacagattt attcagtgtt cagaatggca agctagactt
      721 ttcttctact gttcacaata taatggcaac cgccaggact taaaagtagg agacgtggaa
      781 tttgaagtat catctgacca gaggactggg aaacctattg ctattaaatt ggttaagata
      841 aaaccagaaa tacatcctga agaaccagtg aatggacaag ttgtgtgtac tgttcctcac
      901 aacttagtan natctccagc tgccttgggt cagagtctaa cagggagtgt atgctatgaa
      961 cataatgggg aagtgtttta tctgacttac acctctgaag acgtggaagg gaacgtgaag
     1021 ctggaaactg gagataaaat taactttaat tagaacaata aacacattgg tactgtaagt
     1081 gctcataaca ttatgctttt gaaaaagaaa caagcttgct atcaagaagt agtctgtgcc
     1141 atgaaggagg tgtttggctt tattgaaaga ggtgctgttg taaaagagat atcttttctg
     1201 tagtgaattt aaaggtgatc tagaaatgaa tttaaaggtg atctagaaac cctgcatcct
     1261 ggagatgaag ttgaattcac aaccaaggaa agaaatggta aagaagttgc aacagatgtc
     1321 agactattgc ctcaaggaac agtcattttt gaagatatca gcattgaaca ttttgaagga
     1381 actgtatcca aagttatccc aaaagtaccc aataaaaacc agaatgaccc attgccagga
     1441 caaatcaaag ttgactttgt gattcctaaa gaacttccct ttggagacaa aggcacaaaa
     1501 tccaaagtga ccccgttgga aggtgaccat gttaggttta atatttcaac agactgacgt
     1561 gacaaatgag aatgagcaac caacatagag gttctatcaa atacatttca gttcactgat
     1621 gagttcagag acnatggtgt tgatttcatt aagtgtgtgg actgtgatgc tcgtatgttc
     1681 ctccacctca gtgagattct tgatgggaac cagctccaca ttgcacatga agtagagttt
     1741 actgtggtcc ctgatttgct ctctgcccaa agaaatcatg ctattagaat taaaaaactt
     1801 tccaagggca tggtttcatt ccattcccat tcagatcatt ttttgagcac caaagaaaaa
     1861 gaagccactt tttccaatcc caaaactcca agcccaaata aaggcaaaga caaggaggca
     1921 gaagatggca ttattgttta tggtgactgt gtggtgaagn ctattgtttt tcaagccaag
     1981 gatgtggaag gatctacttc tcctcaaata ggtaaggttg aatttagtat taatgacaaa
     2041 cagaggnntc attctaactc caaaaggctc ttgggttatg cggcaactct gaaagataat
     2101 tctgacttta tttaaacagc tagccatgtt aaggagatat ttttccatta tattgagttc
     2161 tctggtggtg ttgatagcnc tgaactggaa gacatggttg aatacagctt gtccaaaggc
     2221 aaaggtgata aggtcagtgc tgagaaagta aacnntcatt cagtgaatgg cagtactgag
     2281 ggaactaatc caaccatcta ctctnnatgt cctatgagag gtgttgatcc aacacagact
     2341 gagtaccaag gaatgactga gattgtggag gagggggata tgaaaggtga agtgcatcct
     2401 tttggcatag ttgggattgc taacaaaggg gattgcctac agaaagggga gaatgtcaag
     2461 ttcnntagtt gtgtacttgg tcaaaatgca caaattatgg cctacaacat catacccctt
     2521 tgtagggcta ctgtggagtg tgtgaaagat cagtttggct ttattnaagt aggagatagc
     2581 aagctctctt ttcatgtgaa agaagttcag gatgacattg agntacaggt ggaattctca
     2641 gtggtcctta atcagcgcac tgggaaatgc agcgcatgga atgtttggca ggtctgtgac
     2701 ggccccaaag ctgatgcagc tcctcaacct gatcagttgg tcaactgctt aaagaacatc
     2761 accttagatg atgtcaatgc tccatgtcta atgattcttc atcagctann agataactca
     2821 atgggatttg gtgcagaaag aaagatccat caagctggtg tcattgacta accatgtcta
     2881 caaagcacat gattaatcta ctatggtcaa gttgggggga ttctggtgaa gggttctaaa
     2941 tatcttcctc ttcatctctc caaaaatctg gaatacttat tctattgagc tgtaacacca
     3001 gttttaacac cttctttgtg ttatatttaa agaaaaaaga aatttaagaa accattttaa
     3061 aattatgcat agttgcagcc tggaaaacgt taaggtggca cctttagtgt caatctagga
     3121 gctttatttg atgcatttag tacaactggt aattgcaaat tccacttggc ctgtgtaagt
     3181 gaacaaacaa actgttacat tgttggccta tgaaattctg cactctagcc agtgtataca
     3241 ctctaccttc attactaaca ctcagatgca ctcttttcct tttcttccca ttcattatgc
     3301 tttaattatg agaaccatat gaaggtagaa tgtattactt ttaaaaattg caaaaattta
     3361 tatagtaaat gattttctta agttgatggc caaatgttaa aatgttattt tcgtatcatt
     3421 tatcatcttg tcacaatcca cttaacgaag tttgattaca tttcagtgaa aattatcttc
     3481 cagaatagtt tttcttcttc ttcttcttgg gatggggggg ggggtaaata actttactat
     3541 tagtatgtat ggtgcagaat ttcatgcaaa tgaagtgtga cattagagtg agaatttaaa
     3601 catatttaaa ctaaagacga atgcacaaaa ctgctgctgc ttagatcact gcagcttcta
     3661 ggacccagtt tcttttactg atttaaaaac aaaatgaaaa aaaaaa
//
