LOCUS       XM_006252792            2061 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus serologically defined colon cancer
            antigen 3 (LOC100363321), mRNA.
ACCESSION   XM_006252792
VERSION     XM_006252792.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006252792.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006252792.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2061
                     /gene="LOC100363321"
                     /note="serologically defined colon cancer antigen 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 ESTs, 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100363321"
                     /db_xref="RGD:2323222"
     CDS             92..1171
                     /gene="LOC100363321"
                     /codon_start=1
                     /product="endosome-associated-trafficking regulator
                     1-like"
                     /protein_id="XP_006252854.1"
                     /db_xref="GeneID:100363321"
                     /db_xref="RGD:2323222"
                     /translation="MSGYARRQGAPPLSRTRSLVVPDGDKLEDLEEANPFSFKEFLKT
                     KNLSLSKEDTATSRIYPKEASRHPLGLDHNSPVSQPMGYGLEYQQPFFEDPTRASNLE
                     EDEEDGWSRAYLPSAVEQTHSTRATQNSSPCGTYLSFFSNASELAGPESLPPWTLSDT
                     DSRLSPASPAGNPNVDFAAHEESLGDRHLRTLQLSYEALKDENSKLRRKLSEVQSFSE
                     TQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVMKLKQE
                     VNLLQAQLSNFKRENEALRSGQGASLTVVKQNTDVALQNLHVVMNSAHASIKQLVSGA
                     ETLNLVAEILKSIDRITEVKDEADS"
ORIGIN      
        1 ttggcaggct tccggccggc cgcgccggat gaggcagggg ctggcgacgg cgttgtgggc
       61 catggggccg cggccgggtt agggcgcggc gatgtctggc tacgcgcggc ggcagggcgc
      121 gcccccacta tcgcggacgc ggagcctcgt agttcccgac ggtgacaaac ttgaagacct
      181 tgaagaagcc aatccattct ccttcaaaga gtttttgaaa accaagaacc tcagcctgtc
      241 aaaagaagac acagccacca gtcgaattta cccgaaggag gcctcgaggc acccactggg
      301 actagaccac aactcccctg tctcccagcc catgggatat ggcctggaat atcagcagcc
      361 attttttgaa gacccaacaa gagccagcaa cctagaggag gatgaagagg acgggtggag
      421 cagagcctac ctgccgtctg ccgtggagca gactcactcc acgagagcca cgcagaactc
      481 atcgccctgt ggcacctacc tttccttctt ttccaacgcg tcagagctgg caggtcctga
      541 gtctttgccc ccatggacac tgagtgacac tgactccagg ctctccccag cgtctccagc
      601 tgggaatcct aatgtagact ttgcagctca tgaagaatcc ttaggggaca gacacctgcg
      661 gacgctgcag ttaagttacg aagcactgaa agatgaaaac tctaagctca gaagaaagct
      721 aagtgaggtt cagagcttct ctgaaactca aacagaaatg gtgaggacgc tcgaacggaa
      781 gttggaggcg aagatgatca aggaagagag tgacttccat gacctggagt cagtagtcca
      841 gcaagtcgaa cagaacctcg aactgatgac caaacgggct gtaaaagcag aaaatcatgt
      901 catgaagctg aaacaggaag taaatttgct ccaggcacag ctctccaact tcaagcgaga
      961 aaacgaagcc ctgcggtcag gccagggtgc cagccttacc gtggtgaagc agaacaccga
     1021 tgtggccttg cagaacctcc atgttgtcat gaacagtgca cacgcatcta taaagcagct
     1081 ggtgtctgga gcagagacac tgaaccttgt tgctgaaatc ctcaagtcta tcgacagaat
     1141 tactgaagtt aaggatgagg cagactcttg agaacacgac ctgccgccgg gtcccggcac
     1201 ctctgcaccg atggcaccac acagcttcca actgtgctcc taactaagca gtcctcacca
     1261 aaccatctca cagcctaagc acgtgaccgg gcacctgcag tacagggctc ctttccaccg
     1321 gttgcaccta acagtttaca tgaagtcctt tggggaagtc ccactgtttg atagactcac
     1381 tgatttactg gaagacattt ttataaaacc cagcaatttt tagaaagcac taaagctgaa
     1441 acaacagttt ggtaaaaagc ttcttccact gtcccctcag atttacctat aggatgagct
     1501 cgggctcagg gccagtttta ctaagcagaa cactaagtga gccagtgtgg aagcgagcag
     1561 cctgtacagg actcttgctg tcactctgcc tcacgaacag acgttgacat tgtggccttc
     1621 acggacggct cctgctgtca gcagcctcac cgaggcagca ccactcggta gatgctgctg
     1681 tcctaccagg accctagtac caaagtcaca gactgcattg cagagcgtca cacacgcact
     1741 actctgggct accagcttcg ggaagccatt tgaggctgtt ggttttgatg agtgttaatg
     1801 tgtcagtgca tcttttgcat agtgcggttc agactggaat tagagcacac acctacctgc
     1861 ctcaggtcag caccagttct ttgcgctggc tggctggttt tgaaggacaa gcagacaaaa
     1921 gcagcaccct gtgctgtgct gaggggtcag ggtttgggga ccactttcct atagattttt
     1981 taaatttccc tcttcccctc ctgttgagat caacagcttt cttatctaaa taaatcttga
     2041 agatcattta aaaaaaaaaa a
//
