LOCUS       XM_039089888            1132 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rCG58956-like (LOC100363064), mRNA.
ACCESSION   XM_039089888
VERSION     XM_039089888.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089888.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1132
                     /gene="LOC100363064"
                     /note="rCG58956-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100363064"
                     /db_xref="RGD:2324825"
     CDS             20..877
                     /gene="LOC100363064"
                     /codon_start=1
                     /product="CD209 antigen-like protein E"
                     /protein_id="XP_038945816.1"
                     /db_xref="GeneID:100363064"
                     /db_xref="RGD:2324825"
                     /translation="MGLYKSQVRGKEETGSPEKQKMAGKPELHQLNNHEEEVTLEDQG
                     FAENDPEGLICSSKSLQGHLTRAPWLLLLLISLGLFLLMLAILVQVSRICANPQGQTQ
                     DQKGSSSLGKVAVPQEQTHTGLEQIQQIQQIQQQLTQFNASLAGLCRPCPWDWEFFQG
                     SCYLFSRTLASWGASASSCKDLGAHLVIINSVAEQRFMKYWNVRKNQRSWIGLSDHLR
                     EGSWQWVDHSPLKFSFWKEGEPNNDGDEDCVELFMDEWNDNTCTQQNFWVCEQPSAPC
                     PGHGRSVLS"
ORIGIN      
        1 gagagtacta cggagggcca tggggttata taaatcccag gtcagaggga aggaggagac
       61 ggggagtcca gagaagcaga agatggcagg aaagccagag ctccaccagc tgaacaacca
      121 tgaggaggag gtcacattgg aagaccaggg atttgctgag aatgaccccg agggtctcat
      181 ttgcagctcc aagagtttgc aaggacatct gacccgagcc ccctggcttc tgctgcttct
      241 catctctttg ggcctctttt tgcttatgtt ggccatcctg gttcaagttt ccaggatctg
      301 tgcaaaccca cagggacaga cccaggatca gaaggggagt tccagcttgg ggaaagttgc
      361 tgttcctcag gagcagacac acactggctt ggagcagatc cagcagatcc agcagatcca
      421 gcagcagctg actcagttca atgcctcgct ggctggcctg tgccggccct gtccctggga
      481 ctgggagttc ttccagggaa gctgctacct cttctcgaga accctggcca gctggggagc
      541 ctctgcctcc tcctgcaagg atcttggggc ccacctggtg atcatcaaca gtgttgcaga
      601 gcagagattc atgaaatatt ggaatgtgag gaaaaaccaa cgttcctgga tcggcctcag
      661 tgaccattta cgcgagggtt cctggcaatg ggtggatcac agccctctca agttcagctt
      721 ttggaaagag ggggagccta acaatgacgg ggatgaggac tgcgtggagc tgttcatgga
      781 tgagtggaat gataatacgt gcacccagca aaacttctgg gtctgtgagc agccctcggc
      841 tccctgccct ggccatggac ggtctgtgct ctcctagtca cacaggcttt ggggcatcag
      901 ttccagccac ctggtacatc tcagtgcccc tgttctgagt cctttgagat cctgagagag
      961 tccctggggc cccgtcccct gcaggtcttt cttcttcccc tgtgggtgat ttcagttatg
     1021 caaatcctga gcccatgaat gtccccagta gactcacaca cagtgtgcct agcacgggtg
     1081 gctctctgag tcctgtcccc agcacccaaa taaaagaata aacagataat ta
//
