LOCUS       XM_039088980            1872 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus serine/threonine-protein phosphatase
            2A catalytic subunit alpha-like (LOC100362453), mRNA.
ACCESSION   XM_039088980
VERSION     XM_039088980.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088980.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1872
                     /gene="LOC100362453"
                     /note="serine/threonine-protein phosphatase 2A catalytic
                     subunit alpha-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 22 ESTs, 51
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100362453"
                     /db_xref="RGD:2318135"
     CDS             183..1112
                     /gene="LOC100362453"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 2A
                     catalytic subunit alpha isoform-like"
                     /protein_id="XP_038944908.1"
                     /db_xref="GeneID:100362453"
                     /db_xref="RGD:2318135"
                     /translation="MDEKLFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESN
                     VQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVA
                     LKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD
                     GQIFCLHGGLSPTIDTLDHIGALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGY
                     TFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIM
                     ELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL"
ORIGIN      
        1 agtgacagcg gccggcggcc gagcactgcg gagcgagcca gcgggccggc gccagcgccc
       61 agcagccgcc tggggccgca ggaagcaccc cggggagcgg cggcggcgtg tgcgtgtggc
      121 ccgggtgcgg gcggcggcgc gggagcagcg cagagcggca gccggttcgg gcgggcggca
      181 tcatggacga gaagttgttc accaaggagc tggaccagtg gatcgagcag ctgaacgagt
      241 gcaagcagct ctccgagtcc caggtcaaga gcctctgcga gaaggctaaa gaaatcctga
      301 caaaagaatc taatgttcag gaggttcgat gtccagtcac tgtgtgtgga gatgtgcatg
      361 ggcaatttca tgacctcatg gaactcttta gaattggtgg taaatcacca gatacaaatt
      421 acttgtttat gggagactat gtggacagag gatattactc agttgaaaca gttacactgc
      481 ttgtagctct taaggttcgt taccgagagc gtatcaccat actccgaggg aatcacgaga
      541 gcagacagat cacacaagtt tatggtttct acgatgagtg tttaaggaaa tacggaaatg
      601 caaatgtttg gaaatacttc acagaccttt ttgactacct tcctctcact gccttggtgg
      661 atgggcagat cttctgtcta catggtggtc tttcaccaac catagacaca ctggatcaca
      721 tcggagcact tgatcgccta caagaagttc ctcatgaggg tccaatgtgt gacttgctgt
      781 ggtcagatcc agatgaccgt ggtggctggg ggatatctcc tcggggagct ggttatacct
      841 ttggccaaga tatttctgag acatttaatc atgccaatgg cctcacgttg gtgtccagag
      901 ctcaccagct ggtgatggag ggatataact ggtgccatga ccggaatgta gtaacaattt
      961 tcagtgctcc aaactattgc tatcgttgtg gtaaccaagc tgcaatcatg gaacttgatg
     1021 acactcttaa gtattctttc ttgcagttcg atccagcacc tcgtagaggc gagccacatg
     1081 tcactcgtcg taccccagac tacttcctgt agtgaaagtt taaccttgta cagtattgcc
     1141 atgaacaccg tctgttgacc taatggaatc gggaagagca gcagtaactc caaagtgtca
     1201 gaaatagtta acattcaaac ttgtttccac acggaccaaa agatgtgcca tataaaatac
     1261 aaagcctctt gtcatcaaca gccgtgacca ctttagaatg aaccagttca ttgcatgctg
     1321 acgcgacatt gttggtcaag aatccagttt ctggcatagc gctatttgta gttacttttg
     1381 ctttcttgag agactgcaga tctaggatgt aacattaaca cctgtgagtc cagttgactt
     1441 ccacttagct gtagcttact cagcatgact gtagatgagg atagcaaaca atcattggag
     1501 cttaatgaac atttttaaat gagtaccaag gcctcccctc ttgttgtgtt ctttcaggga
     1561 tactattaat ttaattgtat gatttctctg cactcagttt ctcccttctc aaatctcggc
     1621 cctgcgttgt tctttgttac tgtcagaaaa cctggtgagt tgttttgaac agaactgtct
     1681 ccctcctgta agatgatgta ctgcacaagt caccgcagtg ttttcataat aaacttgaga
     1741 actgagaaag tcaggtttga attgtatcag tgggcacgac tggtgctgtt tattaaacaa
     1801 gataaatcta ttgatcaatt tcagaatttg tagaattcca ggtaaagaaa aataaagatc
     1861 aaggccactg tg
//
