LOCUS       XM_039111484            1716 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selection and upkeep of
            intraepithelial T cells 3-like (LOC100362122), mRNA.
ACCESSION   XM_039111484
VERSION     XM_039111484.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 38% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1716
                     /gene="LOC100362122"
                     /note="selection and upkeep of intraepithelial T cells
                     3-like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 9% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100362122"
                     /db_xref="RGD:2318761"
     CDS             1..1716
                     /gene="LOC100362122"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 2-like"
                     /protein_id="XP_038967412.1"
                     /db_xref="GeneID:100362122"
                     /db_xref="RGD:2318761"
                     /translation="MGAVRVPLTAHCVVLSLLQMVAVSSEQFIVNGLQSPVLVPLGGN
                     LELSCQLSPPQQAKHMEIRWFRNRYTEPIYLYRNGKDLLGETISKYVERTELVKDDIG
                     RGRVTLRIFKVTADDDGSYHCFFKDDKFYEEHIILVNVVATSSDIQILMHAPNTKGVM
                     LECHSRGWFPEPHMEWRDSNGVLIPATSKSHSQDENKIFTMKTSLLIEAKSHWNVTCY
                     IQNPVTHQEESISVVLPGELFSWKIIWIMILSILSILLITFQMTYSIKEHLIHDAWSK
                     RIPLWKKSAMDLIISVFAITGVMLILHLKQRVPDSDQHFELDTLWLEDITMILCVLIV
                     FNIKLMSLIYFRMYGKYDGNVFVKVPYGAEKKQLTYFHFRSRCEGELEDIFIHSSLQA
                     THFHFLMIEPLLMMLCKVTKSGITDNSVTDHPAPSDIKLPDHIPLACLSEADIWLDQW
                     PILEPNLYVVKELVLDQLALGHLELLTIRHNTANFVIKKKSEKYRVLHNLRAIDEKLG
                     TTQVPQAPQDMCHFAFTVWKSNMDKPAKRCGHLFNGMCFHINQLAKMWTGAIPVIVNI
                     GSQVG"
ORIGIN      
        1 atgggagctg taagagtacc tcttactgca cactgtgtgg tcttgtccct tctccagatg
       61 gtagcagtga gttcagaaca attcattgtg aatggcttac agagtccagt cttggttcca
      121 ttgggtggaa atctggaact cagttgtcaa ttgtctccac cacaacaagc aaagcatatg
      181 gaaattcgct ggttccggaa tcgctataca gagccgatat acctgtatag gaatggtaaa
      241 gacctgcttg gagaaactat ctctaaatat gttgagagga ctgaactcgt aaaagatgac
      301 attggaagag gtcgagtaac cctcaggatc tttaaagtga ctgctgatga tgatgggtcc
      361 taccactgct tcttcaaaga tgacaaattc tatgaagaac atatcatatt ggtcaatgtt
      421 gtagcaacaa gttcagacat acagattctt atgcatgccc ctaatacaaa aggtgtgatg
      481 ttggagtgcc attcaagagg ttggttccca gagcctcaca tggagtggag agacagcaat
      541 ggagtgctca ttccagctac atcaaaatcc cattcacaag atgaaaacaa aatcttcacc
      601 atgaaaacat ctcttctgat tgaagccaag tctcactgga atgtcacctg ctacattcaa
      661 aaccctgtaa ctcaccaaga agaaagtata agtgttgtcc taccaggtga gctattttca
      721 tggaaaatta tttggattat gattctgagt atattatcaa ttttactgat taccttccaa
      781 atgacataca gtattaaaga acatctaata catgatgcct ggtctaagag aattcctctt
      841 tggaaaaaga gtgcaatgga cctcataatt tcagtgtttg caattacagg agtcatgctc
      901 attctgcatt taaaacaaag agtcccagat tcagaccaac attttgagtt ggacaccctg
      961 tggttagaag atatcactat gatcctgtgt gtgctgatag tgttcaacat caaactcatg
     1021 tcactgattt acttcagaat gtatggtaaa tatgatggga atgtttttgt gaaggtacca
     1081 tatggtgctg agaagaagca actgacatat tttcacttta ggtctcggtg tgagggtgag
     1141 cttgaggata tctttatcca ctcatctcta caagctactc actttcactt tctgatgatt
     1201 gagcccttgt tgatgatgtt atgcaaggta acaaagtcag ggattactga caattcagtc
     1261 actgaccatc cagcgccaag tgacatcaag ttacctgacc atataccatt ggcatgccta
     1321 tctgaagctg atatttggct ggatcagtgg cccattttgg aacctaatct ttatgttgtc
     1381 aaggaactgg tcttggacca attagctttg ggtcatttgg aactcttgac catcagacat
     1441 aatactgcca attttgtcat taaaaagaag tcagagaaat atagggttct acataatctg
     1501 agagccattg atgaaaaatt gggaaccact caagtccctc aggctccaca ggatatgtgc
     1561 cattttgcct tcacggtatg gaagtctaat atggataaac cagcaaaaag atgtggccat
     1621 ctctttaatg ggatgtgttt ccatataaat cagttggcta aaatgtggac tggggcaatt
     1681 cctgtgattg tgaacattgg cagccaggtt ggctaa
//
