LOCUS       XM_039100692            6205 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mCG114696-like (LOC100362054),
            transcript variant X2, mRNA.
ACCESSION   XM_039100692
VERSION     XM_039100692.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6205
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6205
                     /gene="LOC100362054"
                     /note="mCG114696-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100362054"
                     /db_xref="RGD:2318927"
     CDS             3627..5138
                     /gene="LOC100362054"
                     /codon_start=1
                     /product="zinc finger and SCAN domain containing protein
                     4C-like isoform X1"
                     /protein_id="XP_038956620.1"
                     /db_xref="GeneID:100362054"
                     /db_xref="RGD:2318927"
                     /translation="MASQFRETFMPKSLSNDLELDNAEFIPTHASAVQWGENISHSPS
                     VQFNISPNNNGSLAKQELQTLWEMFTSWLQPEKQSKEQMISQLVLEQFLLTGHCKDKF
                     ALTEKWKSCGRNMGRFMQGLTDECLKPPAMVHVCMHGQEALFSENMPLKEVITHLEQQ
                     KAAATPTEENVRSLLAIPKDMATGYENTENCQTPWNASVRNGSVNSIGTMRDSLLTLQ
                     RVQYQEPEEGDVLYEIPQVVRRASQGTSRFQERSLRAPSSEDVLMEAKPVFLSLTEQS
                     EDIGDGHNTTDVNGGISLTNEEDSIFIIQREQYSEPDMEGVSYGVPQDLRIAVCGTSR
                     SLQESLWAASSEVVPMKVPGFLSRAEQPNPKPVPLFQNYEVNSTFEGYQERLQRDPKP
                     YKCEECSRTFKYPCNLSIHQKTHRKERPFFCKECQVGFYEDSELQVHEVIHKAEKPFT
                     CSSCGKAFRYKTNLQAHERIHTGEKPYSCSLCNSSFRQSSTYHRHLRKFHKSE"
ORIGIN      
        1 tctgctacat atgcagttgg agccctgcat cagtccatgt atagtctttc tgtagtggtt
       61 cagtccctgg aagctctggt tggttggcat tcttgtagga agagggatta ttaatataca
      121 cctaagttct cagttagtca gggctacact atgaaaccat acctcaaata ggaaaacaaa
      181 aacaaaaaca aaaatcaaga agccacaaac aaactgaaat caaaattaaa atatataaga
      241 caagaagaaa ttatttacct aacaatgacc tcttacaatg tgaatgtggg gtgtttgaac
      301 aatgtctcca cttaggaaat ttctgtcact gactaagaaa tatgcaaatc aagatcctga
      361 aagaagatcc aatgtactta catttacatc aagtctttca aaatttgaaa atttccactg
      421 aagcaccaat attcaacaag gcatttctta tgagtgtgtc actggtgctt atgcatgtga
      481 cagatgtgtt tcaacatcag aaacattact ctaccattgt gtaacctaag gttttgtgga
      541 cagggtgtct tactgacatg tattagccaa tttgaaaagc caggtagtta cttcaatccc
      601 cagattctgc ctttcaggta cagggatcag agactagtgt tggaagccag acctttagat
      661 gtgagctgag ggctcaacaa atttttcatg attgcaatat gagtatatcc ctgactgagc
      721 catcctccag acagaaggca tttcctctaa aacattcagt tcttacccat atgtcaactt
      781 ctcagtctct ctgaaaccat ataaatatac tatatttagt tagaaacatc aaacatttga
      841 tgggatcctt tctgatttat tcatgctaat ttagagtagt aaaaattttc catataacca
      901 ttttggagga agggaaaact ctccttagta acaaaaacta caataacttc ttagaatttc
      961 ttcccaatta cacatgactg ctttttataa taatctctta cctcaggtaa catgacagga
     1021 ggcttcaagc actcatgagt cagaccctgc atgaatctcc tcatgtttct gccacaggat
     1081 ttccacttct ctgtcaaggc aaacttgtcc ttgcaatgcc cagtgatgag aaactgctcc
     1141 aagaccagtt gagaaatcat ctgctttgct ctgcttttct gactgctgcc aggaggtaaa
     1201 catctcccag agtgtttgca gcttctgctt tgccagggag caattgttat tcggggaaac
     1261 attaaactga acacttggta ggtgagagat gttttctccc cagtgcatag cagaaacctg
     1321 ggttggaata aagtctgcat tgtctaattc aaagtgattt gatgatgcct tgggcataaa
     1381 ggtttctgtg cactgtggag ccattgtgtt aagaatcctc agaaaaattc aactatgcca
     1441 atttgctatt tgtcttctga gttgaggcct gtttcaacaa ttggtgaatg tatgacagct
     1501 attcgttaaa aagaaaggag acacataatt aacagcatgt atctcctgtg acttctaatc
     1561 ctgtgctctc acatatgact cattccaaaa ttgttaaatt ttcatcgttt ttagagcgtt
     1621 ttagattcca gatgcttcag taaacaaggt cagacccttg gaggtggaat gagaggaaga
     1681 ggcagagacc ctcctgaatg tgtctgaatc acaacagaaa caaacaaaca aacaaatgaa
     1741 cgaacacaga agctgaacgg ggctcatctc tgtaagcaga gaagggtttg tattagtagt
     1801 ctggatagac ttcaagtgct atggccaaaa accaactatt taatagttct ttttcttttc
     1861 tttccttttc ctcatgtgtg tgtgtgtgtg tgtgtgtgtg tgagtgtgtg tgtgtgtgtg
     1921 tttgcgtgca cacttctttt ctcaaaaggg tatcatttag tctttctgct caaaaattca
     1981 ctgaaaatga ccttgtactc caatcttatg tcttttacat ccctagtgct gggattctct
     2041 cacaagaatc attttttttt tttttttttt tagtttttgt ttttctgagc aagtatctca
     2101 ctagagctgg ctctcctgga tgagcatggt gggactcaca gacatctgtc tgcttctgtc
     2161 tcctctatgc tgggattaaa ggcctgggcc agtttctcca agcattctaa ttgttgggta
     2221 aaattatgtg ccctgaaatt cagaagttga gggattaacc tcaaagacct tagactgtgg
     2281 ccttatttca aaagagttct gaacttcttc acaaaagtcc gaaccctaag tgtcatcagc
     2341 ccaaataaga aggctggaag atcagagctg aaacaaacaa acaaacaaaa tgaagcaaaa
     2401 ctttcaacca aagtccttga gattacaata ctgaaaaatc tgaatgttga aatcacaagc
     2461 tgtgatttca tagaaaaaaa aagtcacctg ataggattaa gaaatccaat ttctggggct
     2521 ggggatttag ctcagtggta gagcgcttac ctaggaagcg caaggccctg ggttcggtcc
     2581 ccagctccga aaaaaagaac caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aagaaatcca
     2641 atttctggga ataagccaca aggtatatca atgcttgagt tcagtggaag aaattcccat
     2701 tatttggcag cattaatatt ctttttcatt gatgaaattc aggattttaa tgtcatagaa
     2761 acattgatca taagaagcat ccatatgaaa ataattttcc tgagattaaa aaacacttaa
     2821 atctgagaac cagggagtgt tgactttagt cagtagtttc tccagtgtgc ctctgagtgg
     2881 atacgttttt gtggtttgtg tgtgcgtgtg agtgtgaaag tacatgcgca caccacacat
     2941 gcgcgagcaa gcacatgtaa atgtgcgttt atgcatgtgc cacctgttac atgggggggt
     3001 tatgcattgg ggcatgcacg ggggtgcgtg cgcgcgagtg tgtgtgtgtg tgtgtgtgtg
     3061 tgtgtttgtg agatggtcag ttatgtgtgt ttcccacttg tacagtaaaa tgaattaaat
     3121 attaaaagat taaacatggc tagcggtctg taaggctcag aaacctgggt atagtgggcc
     3181 tacaattagc cagctgccca agagtgacca tttcacctgc ctgtctagaa agcagtccat
     3241 caggacccct tgtatggagc aaaaggaggc caggacgaat gccataccca gatcaatcag
     3301 gaaaagcaac aggcagctac aatcttatac gtcactgtag cccccgctca ccaagacccc
     3361 gaagtttctg gaaaacgcct aagaaggctt ttgcacacgc accagcaact ctcctcagta
     3421 agactccgaa atttctgaaa gacgcctcat atgcatcggc agcagcgcct ctcgctaaga
     3481 tcccgacgtt tatggaaaac agcccgcacg gcttcttcag cttcggccca gcttttacac
     3541 attcaccaat tgctgaaata gggcctcaac tcagaagaca aataccaaat tgccatagtt
     3601 gaaattttct gaggattctc atcacaatgg cttcacagtt cagagaaacc tttatgccca
     3661 agtcattgtc aaatgacctt gaattagaca atgcagagtt tattccaact cacgcttctg
     3721 ctgtgcagtg gggagaaaac atctctcact caccaagtgt tcagttcaac atttccccaa
     3781 ataacaatgg ctccttggca aagcaggagc tgcaaacact ctgggagatg tttacttcct
     3841 ggctacagcc agaaaagcag agcaaggagc agatgatttc tcaactggtg ttggagcagt
     3901 ttctcctcac tggacactgc aaagacaagt ttgccttgac agagaagtgg aaatcctgtg
     3961 gcagaaacat ggggagattc atgcagggtc tgactgatga gtgcttgaag cctcctgcta
     4021 tggtccatgt ttgtatgcat gggcaggaag ccctcttttc tgagaacatg cccttaaaag
     4081 aagtcatcac acatttggag caacagaaag cagcagcaac tccaacagaa gagaatgtaa
     4141 ggtcactctt ggctatcccc aaagatatgg caacaggata tgaaaataca gaaaactgcc
     4201 aaactccctg gaatgctagt gttcgaaatg gcagtgttaa tagtatagga accatgaggg
     4261 attccctcct cactctccag agagtgcagt atcaagagcc tgaagagggg gatgttttat
     4321 atgaaatccc acaggttgtc agaagagcaa gtcaaggtac ttcaaggttt caggaaaggt
     4381 ccctgagagc accttcttct gaagatgtcc ttatggaggc aaaaccagtg tttctctcac
     4441 tgacagaaca gtctgaggac attggggatg gccacaacac tactgatgta aatggtggta
     4501 ttagtctcac aaatgaggag gattccattt ttattatcca gagagagcag tattctgagc
     4561 ctgatatgga aggtgtttct tatggagtgc cacaggattt aagaattgca gtgtgcggta
     4621 cctccaggtc cctgcaagag tccctatggg cagcttcttc tgaagtagtc cctatgaagg
     4681 taccagggtt cctttccagg gcagagcagc ctaatcctaa gcctgtccct cttttccaga
     4741 attatgaggt aaattccacc tttgagggtt accaggagag actccagaga gaccccaaac
     4801 catataaatg tgaggaatgt tccagaacct tcaaatatcc ctgcaacctc tccatccacc
     4861 agaaaacaca cagaaaggag agaccgtttt tctgtaagga atgccaggta ggtttttatg
     4921 aagactcaga acttcaagtt catgaggtca tacacaaggc agagaagcct ttcacatgca
     4981 gttcatgtgg aaaggctttc agatacaaga ccaacctgca ggctcatgag agaattcaca
     5041 caggagagaa gccttactcc tgctctctgt gtaatagtag cttccgccag tcatccacgt
     5101 accaccgtca cctgaggaag ttccacaaat cagaatgaac ggtggacttt actcaccaga
     5161 gacaagtagg gcttcactca tcctcagtgt ctcatctgca catgaagtag catgtagctt
     5221 ctcagtaatg gttaaccagt gaggatgatt catttaatat ttagattgtt ccttccatgt
     5281 gttgtcccat gccattggca tgtgaagtta aaaatgaagt ttttgtctgt ttactaaagt
     5341 tttccaagta cctaaatact ggctgttatc ggatttccca gtagtaaata aagatctgtt
     5401 tctcttgttt tatgtgtctt gtgtgtttgt gtatccagca tgttagtggg tgccagtgtg
     5461 tggggctatg gtgtcctacc ttccacctta tttgttacag actttcttgt ttaacaattt
     5521 gttctccagg aaagggtact ttgaagaaca taccatcctc ttgtcttcat tctccacagt
     5581 tcttaggaag ctgagctctg acaaatatct ctgtcactgg atctgccttt caagaatttt
     5641 tattttatgt gtgtatgctt gagtgtatat atttgtattt cctgtttgaa ggagccgttt
     5701 tgtgtctgtg ggtccatcag atctcctgct tttatttggg ttaatttgtt ttgactgtta
     5761 cctgatctac acagaatatg acctcacgtt gccactttga tttgcatccc tcattgtatt
     5821 tccttcattt tggagggtga tgtatttcat ttcgcataaa ctttggacat ttctgagatg
     5881 tttgtaggaa atttatccaa gtgtgaatcc attcctcatt tgttttatat gttacatttt
     5941 ttccaaactt agttttaaat attttcttta tggtggagtc atgtgagagg tacataatgc
     6001 ttttatgctg gacccgagtt cagcacccag ctccggccag tgtctcacaa acatttataa
     6061 attgaactgt agaagatctc atgcctatgg cctctgttga ccctcatact tacattcaac
     6121 ctcccccagc aaacataatt aaaaacaaaa taaatcttag ctacaattaa tctttataaa
     6181 atgtgaatat ataactactc aatat
//
