LOCUS       NM_001402196            1748 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus complement factor H-related 2-like 1 (Cfhr2l1),
            mRNA.
ACCESSION   NM_001402196 XM_039091341
VERSION     NM_001402196.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Mar 8, 2022 this sequence version replaced XM_039091341.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.36425.1,
                                           SRR26643287.28880.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JAXUCZ010000013.1  53847331-53847482   c
            153-326             JAXUCZ010000013.1  53843133-53843306   c
            327-521             JAXUCZ010000013.1  53831227-53831421   c
            522-698             JAXUCZ010000013.1  53830689-53830865   c
            699-875             JAXUCZ010000013.1  53820279-53820455   c
            876-1058            JAXUCZ010000013.1  53817495-53817677   c
            1059-1748           JAXUCZ010000013.1  53813350-53814039   c
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..1748
                     /gene="Cfhr2l1"
                     /note="complement factor H-related 2-like 1"
                     /db_xref="GeneID:100361907"
                     /db_xref="RGD:2319172"
     exon            1..152
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1261
                     /gene="Cfhr2l1"
                     /note="Cfh protein-like; complement factor H-related
                     protein 2-like; complement factor H-related protein
                     3-like; complement factor H-like; complement factor
                     H-related protein B"
                     /codon_start=1
                     /product="complement factor H-related protein B precursor"
                     /protein_id="NP_001389125.1"
                     /db_xref="GeneID:100361907"
                     /db_xref="RGD:2319172"
                     /translation="MGFCNLLLLTTVFLTLWFTTSKGEGIACKPPYIPNGIYSPHKIN
                     YTIDDEIKYECKNGFYPATKGTVAKCTSTGWIPLPRCSLKPCDFPQFKHGRLYYEESR
                     RPYFPVPIGKEYSYYCDNGFTTPSQSYWDYLRCTVNGWEPEVPCLRQCIFHYVENGES
                     SYWQRRYIEGQSAKVQCYSGYSLPNGQDTMICTENGWSPPPKCVRIKSCDMPVFENAV
                     IKNNSTWFKLNDKIDYECHDGYENKYKQTKGSITCNDDGWSDKPSCYDSTKICGPPPP
                     IDNGDTTSFPLQRYIPSSSVEYQCQSLYQLQGNKTIICINGEWSDPPKCLHPCIISKE
                     IMEKHNITFRWEEKQKRYYQSGETQEFKCKNGHHLATTQPLITICINGQINYPTCTKS
                     H"
     exon            153..326
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            327..521
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            522..698
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            699..875
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            876..1058
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1748
                     /gene="Cfhr2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctagtagtg tgctgaattt cagagtgatg acagggttcc cagaagcacc accacggctg
       61 gagttttaag gttgagaaca tggggttctg taacctgttg ctcttaacca ctgtcttcct
      121 aaccttatgg ttcactactt ccaaaggtga aggaatagca tgcaaacccc cgtatattcc
      181 aaatggaatc tactcacctc ataagattaa ctacacaatc gatgatgaaa taaaatatga
      241 atgtaaaaat ggcttctacc ctgcaacaaa gggaactgtt gcaaagtgta caagtactgg
      301 atggatccct cttccaagat gtagtttgaa gccttgtgat tttccacaat tcaaacatgg
      361 acgtctgtat tatgaagaaa gccggagacc ctacttccca gtacctatag gaaaggagta
      421 cagctattac tgtgacaacg ggtttacaac gccttcacag tcgtactggg actaccttcg
      481 ttgcacagta aatgggtggg agcccgaagt tccatgcctc aggcaatgta ttttccatta
      541 tgtggaaaat ggagaatctt catactggca aagaagatat atagagggtc agtctgcaaa
      601 agtccagtgt tacagtggct atagtcttcc aaatggtcaa gatacaatga tatgtacaga
      661 aaatggctgg tcccctcctc ccaaatgcgt ccgtatcaag tcatgtgata tgcctgtgtt
      721 tgagaatgct gtaattaaga ataatagcac atggtttaaa ctcaacgaca aaatagacta
      781 tgaatgccat gatggatatg aaaacaaata taaacaaacc aaaggctcca taacttgtaa
      841 tgatgatgga tggtctgata agccctcatg ttatgattca acaaagatct gtgggcctcc
      901 tccacctatt gacaatggag acaccacatc cttcccacta caacgataca taccatcatc
      961 atcagttgaa tatcagtgcc agtctttata ccaactgcag ggcaacaaga caataatatg
     1021 tataaatgga gagtggtctg atccaccaaa atgtttacat ccctgtataa tatcaaaaga
     1081 aattatggaa aaacataaca taactttcag atgggaagaa aaacaaaagc gctattacca
     1141 atcaggggag acgcaagaat ttaagtgtaa aaacggacat catctggcaa caactcaacc
     1201 gttgattaca atatgcatta atggtcaaat caattatccc acttgtacaa aatcacacta
     1261 acactcttag actttaagca tacacttttg ttcagttagg gtgcatgcat attatcaata
     1321 cagtaagagt attactttta aactcttgtt taactaattt tcattcataa gtataagctg
     1381 gtgtccatat ttggtgatta atctgggaac taggagactg tagacagcaa gggaaaagaa
     1441 gtttctttaa agtttctaaa tcaaaatatg atatatccta gcataaaaac cagtagcaat
     1501 aattacaggt aattacttct ctatctgcct ctatctacca ctttcccaaa tctttcaaag
     1561 cttctactct gccttttgtt ataagacttt gattcacaat gaacacaaaa catgttctca
     1621 gtctccaaaa ctgtagcatt tcacaaatat ataagaaaac tgtcatagtt tatattacta
     1681 gtgaatataa ataattctac atattgcttt tgttaccaat aaataataca aagaactttg
     1741 caaatgaa
//
