LOCUS       XM_039106588             632 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high-mobility group nucleosomal
            binding domain 2-like (LOC100361388), mRNA.
ACCESSION   XM_039106588
VERSION     XM_039106588.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106588.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..632
                     /gene="LOC100361388"
                     /note="high-mobility group nucleosomal binding domain
                     2-like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 82% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100361388"
                     /db_xref="RGD:2320277"
     CDS             1..417
                     /gene="LOC100361388"
                     /codon_start=1
                     /product="non-histone chromosomal protein HMG-17-like"
                     /protein_id="XP_038962516.1"
                     /db_xref="GeneID:100361388"
                     /db_xref="RGD:2320277"
                     /translation="MVTEDRYALEVIGEKNRNAVECEGYCQEGAGKCEEAARTTPGWI
                     KPTLYTPVQSRHDPRKAGGDAEGDEAKVKDEPQRRSARLSAKPAAPTKAPAKKGEKVP
                     KGKGKVDVGKDANNPAENVDAKTDQARKADSAGDAK"
ORIGIN      
        1 atggtgacag aagacaggta tgcattggaa gtgataggtg agaaaaacag aaatgctgtg
       61 gaatgcgaag gctactgtca agaaggtgct ggaaagtgtg aagaagcagc gaggacgacc
      121 cccggatgga tcaaacccac gctgtatacc cctgttcaga gccgccatga cccaagaaag
      181 gctggagggg atgctgaagg agacgaagcc aaggtgaagg acgagccaca gagaagatct
      241 gcaaggttgt ctgctaaacc tgctgctcct acaaaggccc ctgcaaagaa gggagagaag
      301 gttcccaagg ggaaggggaa ggtcgatgtc ggtaaggatg cgaataatcc tgcagaaaac
      361 gttgatgcca aaacagacca ggcacggaaa gctgacagtg ctggagatgc caagtgacac
      421 gtgtgcattt ctgataactg tgtacttctg gtgactgacg gtacaatttg aaatacaatt
      481 tttatcaagt tttataaaaa tgcagaattt actttttttt ctaaactata ttgttagcac
      541 acagaacact tcactgttgg gaggaaagga tcatgtgtca ctaacaaaat atcacccaag
      601 ctagattgag gacaggaaac ctctttcctt ga
//
