LOCUS       XM_039087350            1175 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proteasome subunit alpha type-3-like
            (LOC100361067), mRNA.
ACCESSION   XM_039087350
VERSION     XM_039087350.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1175
                     /gene="LOC100361067"
                     /note="proteasome subunit alpha type-3-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 3 ESTs, 68 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100361067"
                     /db_xref="RGD:2320893"
     CDS             299..1066
                     /gene="LOC100361067"
                     /codon_start=1
                     /product="proteasome subunit alpha type-3-like"
                     /protein_id="XP_038943278.1"
                     /db_xref="GeneID:100361067"
                     /db_xref="RGD:2320893"
                     /translation="MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKD
                     GVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSN
                     FGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYG
                     YWGCATGKARQAAKTEIEKLQMKEMTCCDVVKEVAKIIYIVHDEVKDKAFELELSWVG
                     ELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM"
ORIGIN      
        1 ataacctgca tctgtagcct aaaagttcga gcgaaatata tttaaagtaa aagattaaaa
       61 catgtcaaaa aaatgttgca ccagtgttgg caaggatatg gagaagttgg aagccctggg
      121 gatggctgat gggaatgtaa atggcgtggc agtttgagaa gcagtcggtt cctccagaaa
      181 caaagtaagc atagggctca gctctgggtt taccattgta agaagtaggg ctagagtgtg
      241 cggcttagga gcggcgcttg aggcctggaa gcgttctgtg gcctgccggg tcagcaccat
      301 gagctccatt ggcactgggt atgacctgtc agcctctaca ttctctcctg atggaagagt
      361 tttccaagtt gaatatgcta tgaaggctgt ggaaaacagt agtacagcta ttgggatcag
      421 atgtaaagac ggtgttgtgt ttggggtaga aaaactagtc ctttctaaac tttatgaaga
      481 aggctccaat aaacgtcttt tcaatgttga tcgacatgtt ggaatggcag tggcaggttt
      541 gttggcagat gctcgttcct tggcagacat agcaagagaa gaagcgtcca actttaggtc
      601 taactttggc tataacattc ctctaaaaca tcttgcagac agagtggcca tgtatgtaca
      661 cgcgtataca ctctacagtg ctgttagacc ttttggctgc agtttcatgt tggggtctta
      721 cagtgtgaat gatggtgcac agctctatat gatcgatcca tcaggtgttt catatggtta
      781 ctggggctgt gccactggca aagccaggca agctgcaaag acagaaatag aaaagcttca
      841 gatgaaggaa atgacctgct gtgatgtagt taaagaagtt gcaaaaataa tttacatagt
      901 acatgatgaa gttaaggata aagcttttga actagagctc agctgggttg gtgaattaac
      961 taaaggaaga catgaaattg ttcccaaaga tgtaagagag gaagcagaga aatatgccaa
     1021 ggaatctttg aaggaagaag atgaatcaga tgacgacaat atgtaacatt tcaccatcct
     1081 ctggtgtcca tttctgtgac agttgcatat ggctagcacc atggattata tatacccact
     1141 gaccaatttt cattaaattt tgtcttataa acatt
//
