LOCUS       XM_039106170             617 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Cytochrome c oxidase subunit 5A,
            mitochondrial-like (LOC100361008), mRNA.
ACCESSION   XM_039106170
VERSION     XM_039106170.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106170.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..617
                     /gene="LOC100361008"
                     /note="Cytochrome c oxidase subunit 5A,
                     mitochondrial-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 5 long SRA reads,
                     4 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100361008"
                     /db_xref="RGD:2320952"
     CDS             31..471
                     /gene="LOC100361008"
                     /codon_start=1
                     /product="cytochrome c oxidase subunit 5A,
                     mitochondrial-like"
                     /protein_id="XP_038962098.1"
                     /db_xref="GeneID:100361008"
                     /db_xref="RGD:2320952"
                     /translation="MLATALRRCTAAAAARGLLHPVSAPSPAAAVCSVRCYSHESHET
                     DEEFDARWVTYSNKPDIDAWELRKGMDTLVGYDLVPEPKIIDAALRACRRLNDFASAV
                     RILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV"
ORIGIN      
        1 agccccagcc agtgcgctgt ggtcgccatc atgctcgcca ctgccctccg tcgctgtacc
       61 gcagccgcgg ccgcccgagg ccttctgcac cctgtttcgg ctcccagccc cgctgccgcc
      121 gtctgttccg ttcgctgcta ttctcatgag tcacatgaga cagatgagga gtttgatgct
      181 cgctgggtga catactccaa caagccagac attgatgcct gggagttgcg taaagggatg
      241 gatacacttg ttggctatga tctggttcct gagcccaaaa tcattgatgc tgctttgcgg
      301 gcatgtagac ggttaaatga ttttgctagt gctgttcgca tcttggaggt tgttaaggac
      361 aaagcaggac ctcataagga aatctacccc tatgtcatcc aggaacttag accaacttta
      421 aatgaattgg gaatctccac tccagaggaa ctgggccttg acaaagtgta aactcccttc
      481 gatgggcttc ccaaggactt aactgctatt gctacttgat tgaaacagtt gcctggaaat
      541 gttttatttg aacaaatttt cctttgagta tcaaaccatg taacttggac tttaataaag
      601 ggaaatgagt ttgaccc
//
