LOCUS       XM_039100813             863 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus alcohol sulfotransferase-like
            (LOC100360574), mRNA.
ACCESSION   XM_039100813
VERSION     XM_039100813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100813.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-162               JACYVU010000030.1  887202-887363       c
            163-371             JACYVU010000030.1  885676-885884       c
            372-419             JACYVU010000030.1  879437-879484       c
            420-421             "NN"               1-2
            422-477             JACYVU010000030.1  879381-879436       c
            478-572             JACYVU010000030.1  847772-847866       c
            573-750             JACYVU010000030.1  837417-837594       c
            751-863             JACYVU010000030.1  830229-830341       c
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..863
                     /gene="LOC100360574"
                     /note="alcohol sulfotransferase-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     Proteins, and 52% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100360574"
                     /db_xref="RGD:2321883"
     CDS             30..863
                     /gene="LOC100360574"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: alcohol sulfotransferase"
                     /protein_id="XP_038956741.1"
                     /db_xref="GeneID:100360574"
                     /db_xref="RGD:2321883"
                     /translation="MLDYTCFEGIPFPANLVPKETFQNVCNKFVVKEEDLIILTYPKS
                     RTNWLIEIVCLIQTKGDPKWIQSVPIWDRSPWIETGKGYDQLIKIEGPQLMTSHLPMH
                     LFSKSLFSSKAKVIYLIRNPRDVLVSHYXVKKPDSLGTYLEWFPKGNVAYGLCFEHIH
                     GWLSMREWDNFLVLYYEDMKKDTMGTIKKICDFLGKNLDPDELNLVLKYSSFQFMKEN
                     NMSNYSPMEKELILTGFTLMRKGTIEDWKNHFTVAQARAFDKVVQEKMAGFPPGMFPW
                     E"
ORIGIN      
        1 gaatcctaac agcacttaca cagagctaga tgttagacta tacttgtttt gaaggaatac
       61 cttttcctgc caatttggtt ccaaaggaaa cttttcaaaa tgtttgtaat aagtttgtgg
      121 tgaaagaaga agacttgatc atattgactt accccaagtc aagaacgaac tggctgattg
      181 agattgtctg cttgattcag accaagggag atcccaagtg gatccaatct gtgcccatct
      241 gggatcgctc accctggata gagactggta aaggatatga tcaattaatc aaaatagaag
      301 gaccacaact catgacctcc catcttccca tgcatctttt ctccaagtct ctcttcagtt
      361 ccaaggccaa ggtgatctat ctcatcagaa atcccagaga tgttcttgtt tctcattatn
      421 ntgtgaagaa gccagactca ctgggaactt atcttgaatg gttccccaaa ggaaatgttg
      481 catatggatt gtgttttgag cacatccatg gctggctgtc gatgagggaa tgggacaact
      541 tcttggtact gtactatgag gacatgaaga aggatacaat gggaaccata aagaagatat
      601 gtgacttcct ggggaaaaat ttagacccag atgagctgaa tttggtcctc aagtacagtt
      661 ccttccaatt catgaaagaa aataacatgt ccaattatag tcccatggag aaggaactga
      721 ttcttactgg ttttactctc atgagaaaag gcacaattga ggactggaag aatcacttca
      781 cagtagccca agctagagcc tttgataaag tggtccagga aaaaatggct ggtttccctc
      841 cagggatgtt cccatgggaa taa
//
