LOCUS       XM_039111029             872 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chromobox homolog 3-like
            (LOC100360453), mRNA.
ACCESSION   XM_039111029
VERSION     XM_039111029.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111029.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..872
                     /gene="LOC100360453"
                     /note="chromobox homolog 3-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 2 long SRA reads, 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100360453"
                     /db_xref="RGD:2322103"
     CDS             85..633
                     /gene="LOC100360453"
                     /codon_start=1
                     /product="chromobox protein homolog 3-like"
                     /protein_id="XP_038966957.1"
                     /db_xref="GeneID:100360453"
                     /db_xref="RGD:2322103"
                     /translation="MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGK
                     VEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDS
                     KSKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCP
                     QIVIAFYEERLTWHSCPEDEAQ"
ORIGIN      
        1 ctgaagcgcg caggcgggag actctgcagg atccgcggcc ctgagcatct gagcgctctt
       61 caagtctccg attaaatttt aaaaatggcc tccaataaaa ctacattgca aaaaatggga
      121 aagaaacaga atggaaagag taaaaaagtt gaagaggcag agcctgaaga atttgtggta
      181 gaaaaagtac tggaccgtcg tgtagtgaat gggaaggtgg agtatttcct gaagtggaag
      241 gggttcacag atgctgataa tacttgggaa ccagaagaaa atttagattg tccagaatta
      301 attgaagcat ttcttaattc tcaaaaagct ggtaaagaaa aagatggtac aaaaaggaaa
      361 tctttatctg acagtgaatc tgatgatagc aaatcgaaga agagagatgc tgctgacaag
      421 cccaggggct ttgccagggg ccttgaccct gagcgaataa tcggtgccac agacagcagt
      481 ggagagctaa tgtttctcat gaaatggaag gactcagatg aagctgactt ggtgctggca
      541 aaggaggcga atatgaagtg tcctcagatt gtcatcgcct tctatgagga gaggctgact
      601 tggcattctt gtcccgaaga tgaagcacaa taattgtttg catttatata tatatattta
      661 tatatatata tataatctgg atcttgggtt ttgaattact agtgtggaaa aaatagcatt
      721 ctaatgaaaa tcaagtttga tatgctggtt ttgaaagtat tgacagtagt tgggatattt
      781 ttggtttttg ttctgcatca aaaggcactg attcctttga gcaagtgaga gctttctgta
      841 gttgcttcct ttaacagtag aatatttgat ac
//
