LOCUS       XM_002727934            1628 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage and polyadenylation specific
            factor 4 (LOC100360200), mRNA.
ACCESSION   XM_002727934
VERSION     XM_002727934.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002727934.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002727934.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1628
                     /gene="LOC100360200"
                     /note="cleavage and polyadenylation specific factor 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 15 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100360200"
                     /db_xref="RGD:2322550"
     CDS             55..786
                     /gene="LOC100360200"
                     /codon_start=1
                     /product="cleavage and polyadenylation specificity factor
                     subunit 4-like"
                     /protein_id="XP_002727980.1"
                     /db_xref="GeneID:100360200"
                     /db_xref="RGD:2322550"
                     /translation="MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFF
                     LKAACGKVHMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKF
                     GECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRRTRRVICVNYLVGFCPEGP
                     SCKFMHPRFELPMGTTEQPPLPQQTQPPTKRAPQVIGVMQSQNSSAGNRGPRPLEQVT
                     CYKCGEKGHYANRCTKGHLAFLSGQ"
ORIGIN      
        1 acggagagcg gctgagagac ctgaggggga gctgggcccg aggccgccgc cgccatgcag
       61 gaaataatcg ccagcgtgga tcacatcaag ttcgacttgg caatcgccgt ggagcagcag
      121 ctcggggcgc agccgctgcc cttccccggc atggataagt cggggactgc tgtctgtgaa
      181 ttctttttga aagcggcctg tggcaaagtg cacatgtgcc cattccgcca cattagtggt
      241 gagaagacag ttgtgtgcaa acactggctg agaggactgt gcaagaaagg ggaccagtgt
      301 gagttcttgc acgaatacga catgaccaag atgccagagt gctactttta ctccaagttc
      361 ggggagtgca gcaacaagga gtgccccttc ctgcacatcg accctgaatc caagataaag
      421 gactgccctt ggtatgaccg tggcttctgt aagcatggtc ccctttgcag gcatcggcga
      481 acccggagag tcatttgtgt gaactacctt gttggattct gccctgaggg accatcatgt
      541 aaattcatgc accctcgatt tgaactgccc atgggaacca ctgagcaacc cccactacca
      601 cagcagacac agcctccaac aaagagagcc ccgcaggtca ttggggtcat gcagagtcaa
      661 aacagcagtg caggcaaccg gggaccccgg ccgctggagc aagtcacttg ctacaagtgt
      721 ggtgaaaaag gacactacgc caacagatgc accaaagggc acttggcctt tctcagtgga
      781 cagtgacagc agcaacagca gcagctggca tcactgtgga gcagcctgag ggcccgctgt
      841 tgggagcatg cacttagctg ctgaatgtag gactggcagg actccggctg gagctgcagg
      901 catacctgtc agggctcact ccgagggcca tgtctgtcct ttggttttgc tataattttt
      961 taaaagaagg accatgtgct tcaggtgggt cccctgagcc agagtttgcc tggacatcag
     1021 tgcctcgttt tttattttat gagttatttt tctggacttc ctgcacagtg ccctgttggg
     1081 gagagagaag ctgggaggcc tatgcatggt cctgggtgga agacagctgg ccattcccct
     1141 cagggcctca ttgaaacacc agcacctaaa gaggatgggt gggtcatgtg gggctgtggc
     1201 cgggtcagcc tgctttctcc atgtcctgct gacgtctgaa gctgtgccta tgaatgtggt
     1261 ttgaacaagg gagcccttcc tgacaaacgt agagcaccct ctgcctggcc tggccctcac
     1321 tgtgggagag gcgccaggct ccccaggctg agctgctttt ctgggcttgc ttgtggggca
     1381 cctatgtgac agtgcttcat tcaagtgccc ctttggccag tgctggagac cacctttaaa
     1441 tagctgaccc agttgatctg cgcctacctc ctgcccagca agctccatgc tgccactcag
     1501 acacctgtgg catgcagagg ccgcccatcc ttgagcctag aaaatgtgaa cccatcacct
     1561 gcaacctgct gggcaagtgg gcctatccaa gttcagttat gagaatactt tgattaaaaa
     1621 gcttgttt
//
