LOCUS       XM_002728680            2503 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus osteoclast-associated receptor-like
            (LOC100359972), transcript variant X1, mRNA.
ACCESSION   XM_002728680
VERSION     XM_002728680.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002728680.6.
            
            On Jan 21, 2021 this sequence version replaced XM_002728680.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2503
                     /gene="LOC100359972"
                     /note="osteoclast-associated receptor-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100359972"
                     /db_xref="RGD:2323073"
     CDS             541..2055
                     /gene="LOC100359972"
                     /codon_start=1
                     /product="T-cell-interacting, activating receptor on
                     myeloid cells protein 1-like isoform X1"
                     /protein_id="XP_002728726.2"
                     /db_xref="GeneID:100359972"
                     /db_xref="RGD:2323073"
                     /translation="MQSGESMLTWGTMNSQFLLLFCLGIWTGQTDISVFGSFFNPIFN
                     VWPSSVVPARGNVTLQCTTYKEDANCVIKKEGTNLNLETPIGVTDRTSKLHLPKNWPR
                     TVELYLTGLEQSDAGCYTCECYENENPDDMLSVEILLLVTGHLPKPSLQAHQRSNVTA
                     KENVTLHCQKPDNVTEYKMFMLLKEGTSSPVQVQSSESNRADFLLHNMIPYDTGNYSC
                     VYHKKEAPFWASHPSDHIQIFVSDPNVGQTDTKRDDTLPKPCLSAWPNSVASENGNVT
                     LHCVSPTPDIQLVLRKGGVILDSRLPHHLTQATAEFRLTNLRQADAGYYTCEYYLKTS
                     PDRISPSSDGLLLLVTGYLYKPSLRVNHSGLMTTGGKVNLQCQKPHNLTNYKMFALLK
                     EGMSSPVQFQNSESDTVDFTLQDVTVNDTGRYSCVYLQTEAPFRTSYPSDHLVISVAI
                     TPSAVSECYTKSNHIRLGISAMFVVFMAVFLAEAWYSQRASLSRHRPYSTPGPP"
ORIGIN      
        1 tcttagggag gcattttctc aactgaggtt ccctcctccc agatgactct agcttgtgcc
       61 aagttgacat aaaactagtc agcacaatgg tttacgaaaa agttgggaga gaacaagcag
      121 tgaggagaac aagcagtcag gagaaggata cgttggaggt gtctgacaga agtgggagtt
      181 tagagatggg gatagatatg atgtatggaa ctgtcaaaaa acaaataaaa ttaatattga
      241 aacaaaccaa agaacaaaag ggcaggggac aacaccaatt agtctatgat tagcatcgtc
      301 tcagaagctt ggtgagaatt cataagtaag cttagaggta ggtggtctga attctttctg
      361 tgtggtaaga ggcctcagta aaccaagcca gtaggaagtg gcgtgacata tcgatagaga
      421 tcacatcccg attatcacca tgaaacagaa gctgagggct agctctgaag attacgagct
      481 gaaggaaagg ccttactgct ggtgtgggaa ttaaacttta acaggaatgg caacctgaag
      541 atgcagtccg gggaaagtat gttaacgtgg ggtaccatga attcccagtt cttgctcttg
      601 ttctgtctcg ggatatggac tgggcaaaca gacataagtg tgttcggatc ctttttcaat
      661 cccatcttca atgtctggcc tagctctgtg gttcccgcca ggggcaatgt gaccctgcaa
      721 tgtacaactt ataaagaaga tgcaaactgt gttattaaaa aagaaggtac taatttgaat
      781 ctcgagacac caattggtgt gacagacagg acatctaaat tacatctccc taagaattgg
      841 ccgagaacag ttgagttgta tctcacaggg ttagaacaga gtgatgccgg atgctacacc
      901 tgtgaatgct atgagaatga gaaccccgat gacatgctca gtgttgaaat cctattattg
      961 gtcacaggac atttacctaa gccttccctc caagctcacc aacggagcaa tgtgacagca
     1021 aaagagaatg tgaccctgca ttgtcagaag ccagataatg tgactgaata caaaatgttc
     1081 atgctattga aagaaggcac ctcatcacct gtacaggttc agagttcaga aagcaacaga
     1141 gctgacttct tacttcataa tatgatacca tatgacacag gaaattacag ttgtgtctat
     1201 cacaagaaag aagccccttt ctgggcctca caccccagtg atcacattca gatctttgtg
     1261 tcagatccaa atgttggcca aacagacacg aagagagacg atacccttcc caaaccctgc
     1321 ctcagtgctt ggcccaactc agtagcatca gagaatggca acgtgaccct gcactgcgtg
     1381 agtcccaccc cagacataca gcttgttctc agaaagggag gcgttatttt ggattccagg
     1441 cttccacatc atttgacaca ggcgacagct gagtttcgtc tgacgaatct gcggcaggct
     1501 gatgctggat attacacctg tgaatactat ctaaaaacgt cccccgatag aatctcacct
     1561 tccagtgatg ggctcttact attggtcaca ggatacttgt ataagccttc cctccgagtc
     1621 aaccactcgg gcctgatgac cacaggagga aaggtgaact tacagtgtca gaagccacac
     1681 aatttgacaa actataaaat gttcgctctg ctaaaggagg gaatgtcatc acccgtacaa
     1741 tttcagaact cagaaagtga cacagtggat ttcacccttc aggatgtgac agtcaatgat
     1801 acaggaaggt acagctgtgt gtaccttcag acagaagctc ctttcagaac ctcatatcca
     1861 agcgaccatc ttgttatctc agtggcaata accccaagtg ccgtatcaga atgttatacc
     1921 aagagcaatc acatacggct gggaatatcc gccatgtttg tggtgtttat ggcagttttc
     1981 ctggccgaag cctggtacag tcagagggcg tcactaagca gacacaggcc ctacagcacc
     2041 ccagggccac catgaatcat tggtcaaagc agacaagttg ctcttcagtt ttctatgaag
     2101 cctgtaccgc ccgctctttg aaagctatcc tgggatggga tgacatccat ctcttcattc
     2161 cttacacggc acagaggaca gaactggcca tagatgttca ccggacttca ctgttttaca
     2221 ataactacac tgaaaactac tcctattttc ccctacagat agggcatgct gcctagagca
     2281 taaaccaaag ccttggtact atggatctgt ttctgtgttc ataattatgt tagtatgatc
     2341 tataaggctt tattttatat ttctttagaa tgtattttgt gtaccctcct ggatatcatt
     2401 ggcactatgt atgtagtatg caaattaggt accttttgca gtgtatatta catgtatcta
     2461 atatacaatt aattgtaatg gttttgataa attattaggt tga
//
