LOCUS       XM_002727735            2650 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mCG12681-like (LOC100359777), mRNA.
ACCESSION   XM_002727735
VERSION     XM_002727735.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002727735.3.
            
            On Jan 21, 2021 this sequence version replaced XM_002727735.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2650
                     /gene="LOC100359777"
                     /note="mCG12681-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100359777"
                     /db_xref="RGD:2323463"
     CDS             1618..2370
                     /gene="LOC100359777"
                     /codon_start=1
                     /product="hepatitis A virus cellular receptor 1 homolog"
                     /protein_id="XP_002727781.1"
                     /db_xref="GeneID:100359777"
                     /db_xref="RGD:2323463"
                     /translation="MMPPQVLISGLLLLLPAAVDSFPEVHGVVGQPVTLPCTYPVSNE
                     LESVCWGRGECASDTCGQTLVWTDGNQIYQTSSRYQINAQLLQGNASLTIEDTYESDS
                     GLYCCRVEMKGWDGVQTLTTSLQVQPVWTETVTSSDHPWNNHTEVVPTETPLKIPIRG
                     LCIGISVSAFLLILASIPTVIQCRHRRKKSQESNSECGSVSFHVYHNEAFQSIAQLPA
                     EDVVYVTEDSAHPRVKSQLPLEMTTFQTCRRK"
ORIGIN      
        1 tatgaacata aaaatgtgtg tgtgtgtgtg tgtgtgcgtg tgtgtgtgta tgctaaaatc
       61 ccagttgcat atgtagcaca gtttagagaa caccaggcat tcatgaagcc ctgactggat
      121 cctgagcaca gtgaaaacac caggaggcag cacacaccca tgatccacac tggtggagga
      181 agaaggatca gaagttcatg accctctttg actgcaggag caatttcagg ctgtgaccca
      241 tctctctgcc tccaaatggg tgtggggtat cttatacttg ctcagatggt gacgatccag
      301 aaatcttacc ccaacagatc tgtgacattg tcctcaacat ctttaggaag acacgtggtt
      361 gccttatgta cttggtttgt ggaaatgaaa acaccctcag aattcacaac tgctcgagaa
      421 acacttgctt ggacagcatt ctaccctcta attgccagat gggaaagtag tcatgtccag
      481 tttcccacct tacacaactc ccacacttca ggaggctccg tggacaattt agtacaactg
      541 aaaggtggat ctgggtatgg agacgcttgg cttcagctct ttaaagatct ctgctcacca
      601 agcattctgg gccagcctga aagtcttccc gtagaccttg atgccataga atacaaatcc
      661 acctgcctgg ggttggagag atggtttagc agttgagagc actggctgct cttttagagg
      721 acctgcgttc aactctcatc acctacacgg cttacaactg tctgtatcac cggttccagg
      781 ggacctgata tcctcacaca gacagacata tgtgcgatag ttcaatgagt gaagatgctt
      841 gccaccccac actccctaaa cttttggaag cagagtccat gatctagatt tatttctttc
      901 tcctcctcca ttctaagtat ggacggcgag taaacattta ttagaaagat attagtagat
      961 ggcttccagg aagtataaca aaagccgtgt ccccttttct cttgttccag gaactcttgg
     1021 cttctccagt tcgttctcct ttctgcagtg cagtttactc tcctgtaaat caagaggatt
     1081 ggcccaggtg tcaaagtccc ttaactctcc aaatgtctga aaagcagtgc tgtcccaagg
     1141 cctagagtca cacctcaagt gaggatcttt gctgaagctt ggaaaaccgc tctagcacat
     1201 gaggggtgct cccacttact taggctccct ttagtctgtt tataccagtg aatagatgct
     1261 atctagtggg tggattggag aactggagaa ctcagttttc acacagaaca ggtgagagtg
     1321 tggccaggag atgaggatgg gattacaaga cagaatcttg gagattccat gggcagtaga
     1381 gcaccagaag agactaacaa gaagtcactt tcccttaagt acaggtaagg acggatgtct
     1441 acagacttaa gctgaagaga aagaatcagg atactgctcc atacagtttc ggtaccatgt
     1501 ggaatgacat tgaagatgat gtggggttga atgtgggaca ttaaacaacg atggttggat
     1561 ccctagacat ttgggtgaca gcatccaaca gagttctcca tatatttggt caccaccatg
     1621 atgccccctc aagtcctcat ttcaggtctc ctactccttc tcccagctgc tgtggactcc
     1681 ttcccggaag tgcatggagt ggtgggtcag cctgtcacac tgccatgtac gtatccagtg
     1741 tctaatgaat tagagtccgt gtgctggggc cgaggcgaat gtgcttctga tacgtgtgga
     1801 caaacacttg tctggactga tggaaaccaa atctatcaga caagcagtcg ttaccagatc
     1861 aacgcgcagc ttcttcaagg aaatgcatcc ttgaccatcg aggacaccta tgagagtgac
     1921 agcggtctct actgctgccg agtggaaatg aagggatggg atggtgtgca gacactgacc
     1981 acctcactgc aggttcaacc agtttggact gagactgtga catcttcaga ccacccttgg
     2041 aataaccaca ctgaagtggt ccctacggaa actcccctga agatccccat taggggtctc
     2101 tgtattggaa tctctgtgtc tgccttcttg ctgatcctcg cgagcatccc aactgtcata
     2161 cagtgcagac acagaagaaa gaagagccaa gagagcaact ctgaatgcgg ctcagtttcc
     2221 ttccatgttt atcacaacga agcttttcaa agtatagcgc aactcccagc tgaagatgta
     2281 gtctacgtca ctgaagacag tgctcaccca agggttaaat cccagttgcc cttggagatg
     2341 acaaccttcc aaacctgcag aaggaagtga tggactgtaa ctgcgctgag aatcctttga
     2401 gctgcagggc tgttttccgt atcagtttat ctcaggatcc cacttcctgg cagtggggag
     2461 catggccata gtaatccagg aaatggctgt atctcttact aaagagacgg gagtataagt
     2521 gtatgtacat gtatatgtgt gtgtgtgtgt gtgtgtgtgt aaatgtattt aaatgtatat
     2581 gtacatatat atggccttct atcttactaa agtcattaaa aggacagaaa tataagtaca
     2641 gatatatgta
//
