LOCUS       XM_039093828            2027 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide
            18 (LOC100359681), mRNA.
ACCESSION   XM_039093828
VERSION     XM_039093828.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093828.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2027
                     /gene="LOC100359681"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 18; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 4 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100359681"
                     /db_xref="RGD:2325050"
     CDS             16..1902
                     /gene="LOC100359681"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX18-like"
                     /protein_id="XP_038949756.1"
                     /db_xref="GeneID:100359681"
                     /db_xref="RGD:2325050"
                     /translation="MSLGADGWATRQHVAVTDEKRNAKLRQRNLKLQEASDRSLSQPE
                     NGDVPEEPEKGGKAKKALKHSVTAGSAEAQSGGVPEETVENARVKKSPQKLSILTNGE
                     AAAMPSTDPELKKKRKIGNDAEPDTKKAKTEESTEAREEPEDGVNENTLKAIEEMGFK
                     HMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLTFLIPVIELIVKLKFMPRNGTGVLILS
                     PTRELAMQTFGVLKELRTHHVHTYGLIMGGSNRSAEVQKLLNGINIVLATPGRLLDHM
                     QNTPGFTYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDL
                     ARISLKKEPLYMGVDDNKEVATVDGLEQGYVVYPSEKRFLLLFTFLKNREKKVMVFSS
                     CMLVKYHYELLNYIDLPVLAIHGQQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIP
                     EMDWIVQYDPPDDPKEYIHRVGRTAQGLNGRGHSLLILGPEELGFLRYLKQSKFPLSQ
                     FDFSWSKVSDIQSPLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQ
                     VALSFGFKVPPFVDLNVSSHSSKLKKRGGGGGFGYQKTKKVEKSKIFKHISKKPAGRR
                     QFSH"
ORIGIN      
        1 actgcgcatg tgcatatgtc gctcggtgca gacggctggg caactcggca acatgtcgca
       61 gttacagatg agaagcggaa tgccaagctg cggcaacgga acctgaagct gcaagaagca
      121 tcagacagga gcctgtcaca gcctgaaaat ggagatgtgc ctgaagaacc agaaaaaggt
      181 ggaaaagcta aaaaggccct gaagcattct gtgactgcgg gctcagcaga agcacaaagt
      241 ggaggcgtgc cggaggagac tgtggaaaat gccagagtta aaaaatcacc ccaaaaactt
      301 agcattttaa ccaatggaga agcagcagca atgccgtcta cagatccaga actaaagaag
      361 aagaggaaaa ttggaaatga cgctgagcct gataccaaaa aagcaaaaac tgaagaaagc
      421 acggaggctc gtgaggaacc agaagacggc gtcaatgaga acaccctgaa ggccatagaa
      481 gaaatgggct tcaagcacat gacagagatc cagcataaaa gtatcaggcc acttctggaa
      541 ggcagggatc ttctggcggc tgcgaaaact ggcagcggca agaccctcac tttcctcatc
      601 cctgtgatcg agctcattgt caaactgaag ttcatgccca ggaatggaac aggagtcctg
      661 attctctctc ctaccagaga actggccatg cagacctttg gtgtgcttaa ggaactgagg
      721 acacaccacg ttcacacgta cgggctgatc atgggtggca gtaacaggtc tgctgaagtg
      781 cagaagcttc tcaatgggat caacatcgtc ctggccaccc caggccggct cctagaccac
      841 atgcagaaca caccagggtt tacgtacaag aacctgcagt gtctggttat cgatgaggct
      901 gaccgtatct tggatgttgg gtttgaagaa gaattaaagc agatcattaa acttttgcca
      961 gcacgtaggc aaaccatgct cttctctgcc acacaaactc gaaaagttga agacttggca
     1021 agaatttctc tgaaaaaaga gccactgtac atgggcgttg acgacaacaa agaggttgcc
     1081 acagtggatg gtcttgagca ggggtatgtt gtttatccct ctgagaagag gttccttctg
     1141 cttttcacat tccttaagaa ccgggagaag aaagtgatgg tcttttcatc ctgtatgtta
     1201 gtgaaatacc actatgagct gctgaactac attgacctgc ctgtcttggc catccatgga
     1261 cagcaaaagc aaaataagcg aacaaccacg ttcttccaat tctgcaacgc agattcggga
     1321 atactgctat gcaccgatgt ggcggccaga gggctggaca tccctgaaat ggactggatt
     1381 gttcagtacg accctcccga tgaccccaag gaatacattc atcgggtcgg cagaacagcc
     1441 cagggcctga atggaagagg gcactccctg ctcatcctgg gccctgaaga gctgggtttc
     1501 cttcgttact tgaaacaatc caagtttcca ttgagtcagt ttgacttctc ctggtctaaa
     1561 gtttctgata ttcagtctcc actggaaaaa ctgatcgaaa agaactactt tctgcacaag
     1621 tctgcccagg aagcgtacaa atcctacata cgggcatatg actcccactc tctcaagcag
     1681 atcttcaatg tcaacaactt aaatttgcct caagttgctc tgtcttttgg ttttaaggtc
     1741 cctccctttg ttgatctgaa tgtgagcagc cacagcagca agcttaaaaa gagaggtggt
     1801 ggcgggggat tcggctacca gaaaacaaag aaagtggaga agtccaagat ctttaaacac
     1861 atcagtaaga agccagcagg ccgcaggcag ttctcccact gaggcgattt gccttctgcc
     1921 tggactgact ttgcccaact tcctcctcct ccaaccctcc tccccagtac tctttaaaaa
     1981 ggaacgttta tcacaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
