LOCUS       XM_039109058             885 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L12-like
            (LOC100359613), mRNA.
ACCESSION   XM_039109058
VERSION     XM_039109058.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109058.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..885
                     /gene="LOC100359613"
                     /note="60S ribosomal protein L12-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 11 Proteins, and 85% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100359613"
                     /db_xref="RGD:2325113"
     CDS             1..744
                     /gene="LOC100359613"
                     /codon_start=1
                     /product="60S ribosomal protein L12-like"
                     /protein_id="XP_038964986.1"
                     /db_xref="GeneID:100359613"
                     /db_xref="RGD:2325113"
                     /translation="MVIASLASALGIFVKQPCWLYDVPIRYGRASQGQHEQHGLELPS
                     SREPCFSAFGFRFGGGKGAIFFGRPESGFIRHQPPPPCRPTKFDPNEIKVVYLRCTGG
                     EVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSAS
                     ALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTA
                     QSVGCNVDGRHPHDIIDDINSGAVECPAS"
ORIGIN      
        1 atggtgattg cgtcactcgc ctcggctttg gggatctttg tcaagcagcc atgctggctt
       61 tatgacgttc ccattcggta tggccgtgcc agtcaagggc agcatgaaca acacggacta
      121 gagcttccat caagtaggga gccgtgcttt tcggctttcg gctttcggtt cggaggaggc
      181 aaaggtgcaa ttttcttcgg tcgtcccgaa tccgggttca tccgacacca gccacctcca
      241 ccatgccgcc caaccaagtt cgaccccaac gagatcaaag tcgtgtactt gaggtgcacc
      301 ggaggcgagg tcggcgccac atcctccttg gcccctaaga tcggtcctct gggtctgtct
      361 cccaaaaaag ttggtgatga catcgccaag gctaccggtg actggaaagg cctcaggatt
      421 acagtgaaac tgaccatcca gaacagacag gcccagattg aggtggtgcc ctctgcctct
      481 gccctgatca tcaaagccct caaggagcca ccaagagaca ggaagaagca gaaaaacatt
      541 aaacacaatg gaaacatcac ttttgatgag attgtcaaca ttgcccggca gatgagacac
      601 cggtctttgg ccagagaact ttctggaact atcaaggaga tcctgggtac tgcacagtct
      661 gtgggctgca atgtggacgg ccgccaccct catgacatca tagatgacat caacagcggt
      721 gcggtggagt gcccagctag ttaaaaagca acaagaaggg gttggggatt tagttcagtg
      781 gtagagcact tgccaagccc aaggccctgg gttcggtccc cagctccgaa aaaaagaaaa
      841 agaagcaaca agaaaatatt taaataaaag actatctgat aaaaa
//
