LOCUS       NM_001113223             623 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus hemoglobin subunit beta like 1 (Hbbl1), mRNA.
ACCESSION   NM_001113223
VERSION     NM_001113223.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Sanna,M.T., Giardina,B., Scatena,R., Pellegrini,M., Olianas,A.,
            Manca,L., Masala,B., Castagnola,M. and Corda,M.
  TITLE     Functional alterations in adult and fetal hemoglobin Sassari
            Asp-alpha 126(H9)-->His. The role of alpha 1 alpha 2 contact
  JOURNAL   J Biol Chem 269 (28), 18338-18342 (1994)
   PUBMED   7518430
REFERENCE   3  (bases 1 to 623)
  AUTHORS   Paunesku,T., Stevanovic,M., Radosavljevic,D., Drmanac,R. and
            Crkvenjakov,R.
  TITLE     Origin of rat beta-globin haplotypes containing three and five
            genes
  JOURNAL   Mol Biol Evol 7 (5), 407-422 (1990)
   PUBMED   2263193
REFERENCE   4  (bases 1 to 623)
  AUTHORS   Woo,C., Lam,V.M. and Tam,J.W.
  TITLE     cDNA sequences of two beta-globin genes in a Sprague-Dawley rat
  JOURNAL   Nucleic Acids Res 17 (21), 8870 (1989)
   PUBMED   2587229
REFERENCE   5  (bases 1 to 623)
  AUTHORS   Stevanovic,M. and Crkvenjakov,R.
  TITLE     Genomic sequence of rat beta-globin minor gene
  JOURNAL   Nucleic Acids Res 17 (12), 4878 (1989)
   PUBMED   2748344
REFERENCE   6  (bases 1 to 623)
  AUTHORS   Wong,W.M., Lam,V.M., Cheng,L.Y. and Tam,J.W.
  TITLE     Genomic sequence of a Sprague-Dawley rat beta-globin gene
  JOURNAL   Nucleic Acids Res 16 (5), 2342 (1988)
   PUBMED   3357786
REFERENCE   7  (bases 1 to 623)
  AUTHORS   Ohshita,Y. and Hozumi,T.
  TITLE     Sequence of the rat beta-globin mRNA
  JOURNAL   Nucleic Acids Res 15 (3), 1336 (1987)
   PUBMED   3453111
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001113223.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ183353.1, X05080.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680432, SAMN06680437
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JAXUCZ010000001.1  167650094-167650235 c
            143-365             JAXUCZ010000001.1  167649756-167649978 c
            366-623             JAXUCZ010000001.1  167648859-167649116 c
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..623
                     /gene="Hbbl1"
                     /note="hemoglobin subunit beta like 1"
                     /db_xref="GeneID:100134871"
                     /db_xref="RGD:2290038"
     exon            1..142
                     /gene="Hbbl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..494
                     /gene="Hbbl1"
                     /note="three beta-2 globin; III beta-2 globin;
                     beta-min-globin chain; beta-2-globin; hemoglobin beta-2
                     chain; hemoglobin beta chain, minor-form; beta globin
                     minor"
                     /codon_start=1
                     /product="hemoglobin subunit beta-2"
                     /protein_id="NP_001106694.1"
                     /db_xref="GeneID:100134871"
                     /db_xref="RGD:2290038"
                     /translation="MVHLTDAEKATVSGLWGKVNADNVGAEALGRLLVVYPWTQRYFS
                     KFGDLSSASAIMGNPQVKAHGKKVINAFNDGLKHLDNLKGTFAHLSELHCDKLHVDPE
                     NFRLLGNMIVIVLGHHLGKEFTPCAQAAFQKVVAGVASALAHKYH"
     exon            143..365
                     /gene="Hbbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            366..623
                     /gene="Hbbl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atttgcttct gatactgttg tgttgactcg caacctcagg aacagacacc atggtgcacc
       61 taactgatgc tgagaaggct actgttagtg gcctgtgggg aaaggtgaat gctgataatg
      121 ttggcgctga ggccctgggc aggctgctgg ttgtctaccc ttggacccag aggtactttt
      181 ctaaatttgg ggacctgtcc tctgcctctg ctatcatggg taacccccag gtgaaggccc
      241 atggcaagaa ggtgataaat gccttcaatg atggcctgaa acacttggac aacctcaagg
      301 gcacctttgc tcatctgagt gaactccact gtgacaagct gcatgtggat cctgagaact
      361 tcaggctcct gggcaatatg attgtgattg tgttgggcca ccacctgggc aaggaattca
      421 ccccctgtgc acaggctgcc ttccagaagg tggtggctgg agtggccagt gccctggctc
      481 acaagtacca ctaaacctct tttcctgctc ttgtctttgt gcaatggtca attgttccca
      541 agagagcatc tgtcagttgt tgtcaaaatg acaaagacct ttgaaaatct gtcctactaa
      601 ttaaaggcat ttactttcac tgc
//
