LOCUS       NM_001103354            5599 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 11 open reading frame
            87 (C8h11orf87), mRNA.
ACCESSION   NM_001103354
VERSION     NM_001103354.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5599)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Sep 23, 2008 this sequence version replaced NM_001103354.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.919876.1,
                                           SRR26360194.2207024.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108, SAMN12840109
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-132               JAXUCZ010000008.1  61965141-61965272   c
            133-5599            JAXUCZ010000008.1  61958626-61964092   c
FEATURES             Location/Qualifiers
     source          1..5599
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..5599
                     /gene="C8h11orf87"
                     /note="similar to human chromosome 11 open reading frame
                     87"
                     /db_xref="GeneID:100125362"
                     /db_xref="RGD:1642426"
     exon            1..132
                     /gene="C8h11orf87"
                     /inference="alignment:Splign:2.1.0"
     exon            133..5599
                     /gene="C8h11orf87"
                     /inference="alignment:Splign:2.1.0"
     CDS             376..966
                     /gene="C8h11orf87"
                     /note="uncharacterized protein C11orf87 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C11orf87 homolog
                     precursor"
                     /protein_id="NP_001096824.1"
                     /db_xref="GeneID:100125362"
                     /db_xref="RGD:1642426"
                     /translation="MSARAPKELRLALPPCLLNRTFASHNASGGSNAGIRSSGAGGGT
                     CITQVGQQLFQSFSSTLVLIVLVTLIFCLIVLSLSTFHIHKRRMKKRKMQRAQEEYER
                     DHCSGSHGGGGLPRAGVQAPTHGKETRLERQPRDSAFCTPSNATSSSSSSPGLLCQGP
                     CAPPPPPPVPSPHGAHAASSCLDTPGEGLLQTVVLS"
ORIGIN      
        1 ggcggcggcg gcggcggcga gggcggcagc agcagcgcgg ctctgtctct ggtcccagcg
       61 ctccgtgctt tctgcagccg ccactgcagc caaggcgggg gcttcttctc tgcaactggc
      121 tggcccttcc agcactgtgc ctggggaaag gaaacaagat caaagaagat cggagacaat
      181 ctccctgggg ccactagctc ccgcccgctt gcttgtgggc agttggtcct tcagtctttg
      241 gctggagcgc tcactccctc cagcgcttag agagcagttg gggtggcgtg ggctcttgtc
      301 ctcatcttgg ttggtgggaa ccgtgtgttc aacagaggaa gcctggtggg cctggcccct
      361 ctcagcccag cgccgatgag tgccagggcg ccgaaagagc tgaggctggc cctgccgcct
      421 tgtctcctga accggacctt tgcttcccac aacgccagtg gaggcagcaa cgcaggtatc
      481 cgcagctcag gcgcaggtgg tggcacctgc atcacgcagg tgggacagca gctcttccag
      541 tctttttcat ccacgctggt gctgattgtc ctggtcactc tcatcttctg tctcatcgtg
      601 ctgtccctct ccactttcca catccacaag cgtaggatga agaagcggaa gatgcagagg
      661 gctcaggaag aatacgagag agatcactgc agcggcagcc acggtggtgg ggggctgcct
      721 cgagcaggtg ttcaagcccc aacccacgga aaagaaaccc ggctggagag gcagccccgg
      781 gactccgcct tctgcacccc ttccaatgct acttcttctt cctcctcatc ccctggtctc
      841 ctgtgccagg gtccctgtgc acctccgcct ccaccgccag tcccaagtcc acacggagca
      901 cacgcagctt cctcctgctt ggacacaccg ggcgagggcc ttttgcaaac ggtggtactg
      961 tcctgattgt gcagcccctc tcctgaccct ttcctcattc cagcatcttt accgtcctcg
     1021 cttttgttct tgctttcttc cttttccgtt ctcctttgac ccccgttttc tctgccctct
     1081 ttccttacct ggccaccctt tcactgtctc tcctccgccg aggcactgtg cggtatttgt
     1141 aaatattggg cgaggaaagt ctcagaggaa gaaataacac tgataaatac tttattgata
     1201 tttatagtaa ttattatact attaataaca cagtccaagc gcatgacaaa tcacataatt
     1261 tctcattgtc aatgaaggct gcatcttccc tctccacccc gtgcccccct cagtaaagag
     1321 gagaaaccgc acaagctacc aaatatctaa aagacattga cacctaagca aaggatggga
     1381 ggggaccggg gtgttgtata tagctgtcaa gtgaaagttt agtcaccttt ttgcccctcc
     1441 ctcacgggct ttctcttttc ctttagcttg tctccctccc ctttcctcac cttcagctgg
     1501 gctcaggcaa tagtatatta taaagggaac atctacagaa agcaccagag accacataga
     1561 aggtcccaga aaaacgttta ggacaggtaa cccctctcca gtcagtcatc ctctcacttt
     1621 ttggtgtcct cctcgggcag aatttgagtt tacttttaga aattatctct cgctggccga
     1681 gcgcagaaaa caaaaaccat actatctgct tttgctaccc gttaggcccc acttgcacac
     1741 ttgactggtg gtcattttgt tctgttctgg tttttggttt tggggggagt gtctttttgg
     1801 ttttgttttg gacctcagag aatcgggagc tgtccagcca ggtctggtgc tgaatatgtc
     1861 tcatcttcat ggttacttcc tctggttgtg cagaccaaag aaggagctgt tttggaaagt
     1921 gatcgtcttg gttttgattg gtttctttct tcttcttttc tacaattgga ttagcgtgtg
     1981 ctattgtttt tcttatcatt atacattata cattgtataa gttaccttta tgtgaaaaaa
     2041 aaaagtatta ggtaatgtgc agttttgaaa atgcagtatc taaccagcca ctatgtttct
     2101 gttttatttt tagaacaagt gcacctttgt tatatattat tatatcggta ccaaatacag
     2161 aagaaaacta tagctctgtg atatagcctc caaactgtat attcttgttc tgactttcca
     2221 gctgttgata gaatggttgc cactggctga ggaagtcagt ggttcaggcc tgcctggctt
     2281 ctgctgtttc cggaagtgtt cttttgtatt ttactctgta gtagactatt ataaaatgat
     2341 gacacccgtg tttccccctt ttcttttgtg aatcacagaa acaaccacaa cagaaaacaa
     2401 ataatggatg tgctgggacg ccatctatta aaaacatggt taatctttaa acagtgcctg
     2461 tggtcctctg catgcagttg ccacctggag gcagtgccgt gtgtgcttgt actgtatgca
     2521 tttgggggga aagactggtg gagatgttgg gcaatttgga tgacaggaca taacaacttc
     2581 taagttaaat ccatagatgc ttacaggata aaactgttta tagcttgctt agttatgact
     2641 ctgtgcctgc atccgataga cggggaaatc ttccttcttc ccaagtctgg cctaattaac
     2701 caccccgaac acctagagaa tgttgaggaa aaaggaaagc atgagagaag ataaatctct
     2761 tttgtcctct ctttaaatgt cagataagtc catctatgtg acactttgct gcttggctaa
     2821 ggcagtggga ccccacatat ccctctccca agccactagc tgccctctcc gctgtgtctt
     2881 gttccaagtt gtatgggctt aatattccga gcaattattg cctctaatgt ttttggttat
     2941 atataaagtt ttccaagctc agtctgtctc tttataaaat aatttaataa ggttgattta
     3001 gtcacccata gatatcatct aagtcctttt atgaagcaca gaagatcttc atttaagcat
     3061 gctatgtgta tcgttaggaa gaccaggtat aatctttgga tacaattatt aaacaatgaa
     3121 ccagattctc tccagtgcct tagtcacttc ctagtaacag gtcagagtgc attcactccc
     3181 ttgggccatc aaggaagctg ttagtgtatc ggagctctac actgtacaac agaatggcta
     3241 aggcactgtg aaggagactg tccactaaat ctctttaact tgccctcatc caactgtagt
     3301 tcttaatacc ttcttccaga atgcgttttg gatgtgaaat ctgaatagga tcaggaaccc
     3361 agaaggaagg ttcatcattt caaatgaact ctacttaagt gcatagatat tactttcttc
     3421 ccattatttg gtgcactctt tttacagtaa ataagttccc attttattaa agcaataaga
     3481 tattatgttt tgagcagtgc tagatgctga ttccacttcc ttggtgctga agcgactcat
     3541 gtgttcctgc cttatgaatc agtgcattca aggcatgcaa taataatccc cttccaagaa
     3601 gcagactgta caccctggag ggcaatgtcc tacatacctt tttttcccag aaggaataga
     3661 gtgaactaag aaataaacta attatgtgta tttaaaaaaa acatcttgat acctctaacc
     3721 ataagcacac atctgtaatg tgctattatt gtgcaccttt aaatgtatat gccttttccc
     3781 catccattaa ctagggttta atattttaat agtgtccagt gtaaagagga tgcagctcgt
     3841 caatcacatt tcatactgag tttaatatgc tgtgaacctg gtggcatcac acaagatttc
     3901 tgtgagctag aatgagaatt acatgaaatt cttgtaggcc agatcccaca ccaaattatt
     3961 gtagtaagca tacggcaacg cagatttcta tagagtctgc ttagactgct gcttagagag
     4021 cttaactgac ccatacgaca ttcgaggttt catttttatg agacaaaagg caatatgaaa
     4081 aatagctaaa tttactctaa ggattttatt tactgctgtc ccgtcaaact aattgctcca
     4141 accctctata gctacagctc ggttcccgca cttgctattc agtattaata aggtagcatg
     4201 cttgattctt actgttttaa aaatgagaaa aaatagagag agaatgccaa tatgtcaact
     4261 gtacgggact ctgactcttg aagatgaaga tggatataat ctttagaatt tatatacacc
     4321 catagatatg tatttatata tgcatacatt ttgtacaaat ttacaacgga ctttttgtat
     4381 tctcttttct gtcattatga gtatgagact gaaaccaaat agttgctcca tcctctgatc
     4441 cagagaggat ccgaggagtc aggcgtatgc atgcacttgg ttctctgagg tcaaatcgga
     4501 atggctttct ctttatttag tggaagggga gagtcttcct tggcttgggg aattggtaat
     4561 tagataagct tcctttcctc tattagtgac tcaaatgtag caatgataat gaagtcatga
     4621 ccatctctat gtggtccagc tatttggatg gatcagaaat ctatctatct atctacaaga
     4681 gcattggagc catcttgacc acaatcatgg atttcaattc gatttttcct tttccctttc
     4741 aacttatacg ttgtatgaga tacaacatat acctgcatat gtaaaggtaa aatgaaacta
     4801 taactattat ttgtttagtt tgacaagtag cgttttggaa aacatggaca agttagcttt
     4861 aaaaattact gggcatttga ctttttaacc cttcctgtct gtagccattg aattgattag
     4921 atacttacta aaatttcttt ttccaatgca taggcatagg ttttaagtgc tttatgtgga
     4981 aaattgctga gaaattacta actgatatta tctgagagtt atgggctaaa ttggaaccag
     5041 aaactttaac atggcttcta aagtctactc ccaggagtac ctaggctttg gactggaatc
     5101 tgaaaagcca cttattcatg tttggacgtt gcggtgtggt tcacagatgt tcatgcaaaa
     5161 atgagttgcc ccatctacac agaaaggtat ttcatcactg ggatgaatat aaatctgatt
     5221 ctggttagtc ttttttcctt atttgataac atctgagaag cagatgttat gacttgacat
     5281 caatacttat caatgccacc aacccaatga catgattggt gcggtgtagg aatgcttagt
     5341 ggagaataag aacttactta gctttaactg agagacagtg cattatttgg gttgctttac
     5401 ccatttgagg caagatattt cattgagact tgtggtctca caggattgct gctacagaga
     5461 ggttaacgac agtgtcggca tcaacagaaa aaggtgattt ttgaactcta gtatatccaa
     5521 tagatagaat aaaacaggta ttagaaattc atgaaaaatt tgttttgctt ttatatcaat
     5581 aaaagagttt tcttgttaa
//
