LOCUS       XM_039093815            4764 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X32, mRNA.
ACCESSION   XM_039093815
VERSION     XM_039093815.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093815.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4764
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 47 ESTs, 8 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 130
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             555..4292
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X27"
                     /protein_id="XP_038949743.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLI
                     EDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVD
                     SMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAEL
                     LKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNA
                     VEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAG
                     PSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKV
                     KAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYV
                     MEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKISLKAAGDTVVIEN
                     NDISPEMGSPEKETMSVSLTQTVAHLQQLLQEVNQQLTKEK"
ORIGIN      
        1 acagcaaaga gcagagagac gcagggattc tggtcaaccc ctcgtagcgc tgcagtttct
       61 agttatttac ccttccttgc ctaaggaatg gccagcagcc aaccagcact gcagcctcac
      121 aatatcttgc aacttggagt agggttaaac cgtgtcgggg gccaagtggt acttttgtgc
      181 gagggtcacg tgagaccaag gctgactggg agaggcagag tagggctgag tggatgaagg
      241 gattcctcag ggacttccag gctgaggggt ggcgtctctg caggacagcg cggggcatct
      301 ccaggccgcc ggctgcgccg acctgtccct ttaaggggcc ggtctccgcg tccctttggc
      361 cgcgacgccc ggacgtgcgg agccgccccg ccccgaagcc tcccgtttcc tgcggggcgg
      421 tgcgacggca cctgagctac tgcggcgggg cctcgtagca cgctgacccg gaggtagagc
      481 tcgcgtcgct gcgtcgtccc ggcctggttc ccggctgcgc aggagtctgc gtacgttcac
      541 gttaagagga gactatggag ctgcacgagt ccacgtattt cgttgtcctt atcccttcag
      601 tagttattac tgtcattttc cttttcttct ggcttttcat gaaagaaaca ttatatgatg
      661 atgttcttgc aaaacaaaaa agagaacaaa agttgatttc tacgaaagca gataaaaaga
      721 aggcagaaaa gaagaagaat aaaaagaaag aaatccagaa tgggaccctt catgaatctg
      781 attctgagca tgtgcctcag gactttaaat tatctgatgc ctcacctgtt gaggatgaac
      841 agtttgtacc tgctccattg agtgtggcag aaacttccag cagtgtcagg gaacgaaaga
      901 agaaggaaaa gaaacaaaaa ccttcactcg aagaacatat catcaaagaa agtgatgcat
      961 caaagattcc aggcaaaaaa gtagaacctg tcctagttac agaacagccg gccccacccc
     1021 ccgaagcagc tgccttgaag aagaaagcag ggcagaagaa gtctaaaaat ggaagcgatg
     1081 aactagataa aaaggtggaa atggtgatgg caccctcaca aaagcaagac ggatcacttt
     1141 tccatcaaga aactaaacaa gaaggcggac caggaaagaa gaaaggcttg tcaaagaagc
     1201 aaaagacaga aaatgttgca gtcttggtgg acgagcccct cactcatgcc actgcttctg
     1261 ttccttcggt ggataatgct gactcaagtc tcatgacgga taagagagga gttactgata
     1321 tgattaaacc tgaccaagta gaaggaatcc agaaatcggg aacaaaaaag ctgaagattg
     1381 acactgacaa agaaaatgcc gaagtgaaat ttaaaaattt ccttctgtcc ttgaagacga
     1441 tgatgttttc tgaagatgag gctctctgtg ttgtagacct gctgaaggaa aagtctggag
     1501 tgataaaaga ggccttgaag aagtcgaata aaggagaatt gagtggcctt ctgcatcagc
     1561 ttcaggagaa ggagaggctg ctcactgcca cgaaggaaga cgctgctgcc acgaaggagc
     1621 gctgtaagca gttgacgcag gaaatgatga cagagaaaga aagaagcagc gtggttatgg
     1681 caaggatgaa agaacggatt ggaaccctgg aaaaggaaca taacatattt caaaataaaa
     1741 tgcatgtcag ttaccaagaa actcagcaga tgcagatgaa gtttgagcaa gttcgggaac
     1801 aaatggaagc agagatagct catttgaagc aggaaaacgg tatcctgaga gatgctgtca
     1861 gtaacaccac aaaccagctg gagagcaagc agtccgccga gctgaataag ctgcgccaag
     1921 actgtgggag gctggtgagc gagctgaacg agaagacagg aaagctgcag caagaggggg
     1981 tccagaagaa gaacgctgaa caagccgccg cccagttgaa ggttcaacta caagaagccg
     2041 agaggcgttg ggaagaagtg cagagttaca tcaggaagag gacggcagag catgaggccg
     2101 cacagcaaga cttacagagt aaatttgtgg ccaaagagaa tgaagtccag agcctgcata
     2161 gtaagctcac ggacaccttg gtgtccaagc agcagttgga gcaaaggcta atgcagttaa
     2221 tggagtcaga gcagaagcgg gcgagccaag aggagtccat gcagatccaa gtgcaggata
     2281 ttttggaaca aaatgaggcc ttgaaagctc agattcaaca attccattcc cagatagcag
     2341 ctcagacctc tgcttcagtt ctggcagaag aattacataa agtgattgca gaaaaggaca
     2401 aacagctaaa gcagactgaa gactcattag caagcgaaca ggatcactta gcaagcaagg
     2461 agcaggaact taaggatgta cagaatgtga atttcttatt aaaggctgaa gtgcagaaat
     2521 tgcaggccct ggctaaggag caggctgctg cagcccacga ggtggagaag atgcagaaga
     2581 gtgtccatgt gaaggatgat aagataagac tgcttgaaga gcagctgcag cgcgaagttg
     2641 ccagcagagt ggaagagctt aagattctga atgaccagaa taaggcgtta cagctagaag
     2701 ttcagaagct gcaggccgtg gtctctgagc agcctaataa agatgtggtg gaacaaatga
     2761 aaaagtgcat tcaagaaaaa gatgagaagt taaggactgt ggaagagtta ctagaaactg
     2821 gactcattca ggtggccacc agggaggagg agctgaacgc cataagaacg gaaaactcaa
     2881 gtctgacgaa ggaagttcaa gagttaaagg ctaagcagat ggatcaggtt ccttttgtgt
     2941 ctttaattga agatcttaag aaagtgatcc atgagaaaga tggacagatc aagtctgtgg
     3001 aagagctcct agaagtcgaa cttctcaaag ttgctaataa ggagaagact gttcagttgt
     3061 ccgtaacttc tcaagtccag gagctgcaga acctactaag aggcaaggag gaacaggtgg
     3121 acagtatgaa ggctgcttta gaagacctga cagggagaga gaagtgcaca caggtgtgtt
     3181 cgacaccacg atttgaagaa ctcgaaaatg tattgaaaga aaaggacaat gaaattaaga
     3241 gaatagaagc tatattaaag gatacaaaga gtgacctttc taagaaagca gagctgttaa
     3301 aggaagtaca agatgaaaat aaattattca agtcccaagt ggagcagctc aatcatcaga
     3361 accaccaaca ggcatctttt ccctctcagg aagaattgca aacagtaatt tcagaaaaag
     3421 agaaagaaat aactgatctc tgcaatgagt tagagtcttt gaagaatgct gttgaacatc
     3481 aaaggaagaa aaacaatgaa agacaacagc aagtggaagc tgttgagtta gagtccaagg
     3541 accttctcaa gaggttattt ccagcggtgt ctgtgccttc tcattcgaat tacagtgaat
     3601 ggttacgtag ctttgaaaaa aaggcaaaag catgcatggc tggaccctca gacacagagg
     3661 cggtcaaggt tctggagcac agattgaaag aagctaatga aatgcacaca ctgctgcagc
     3721 tggaatgtga aaaatacaaa tccgtccttg cagaaacaga agggattttg caaaagcttc
     3781 agcgaagtgt ggaacaggag gaaagcaaat ggaaggttaa agcagaggaa tctcggagga
     3841 ctattcagca gatgcagtcc tccttcacag cctctgagca agagctagag cgactaagac
     3901 acgagaacaa ggctatggag aatctaagaa gagaacgaga acatttggaa atagagcttg
     3961 agaaggccga agtggagcga tcgacttacg tgatggaagt cagagagctc aagacacagt
     4021 taaacgaaac ccattcaaaa cttcaaaatg aacaaacaga gagaaagaag gtagctgatg
     4081 atttgcacaa ggctcaacag tcactgaact tcatccactc caaaatttca ctaaaagctg
     4141 ctggagacac ggttgttatt gagaataatg atatttcccc agaaatgggg tctcctgaga
     4201 aagagacgat gtctgtgagt ctcactcaga ctgtggcaca cttacagcag ttgcttcagg
     4261 aagtaaatca gcagctcaca aaggagaagt gatccagtgt gggagtgaag taatcgggaa
     4321 attattcgtt agcagttaac agaaggcgtt gtattatatt ttgccaaatt aaagccttat
     4381 ttatgtttta ccctttctac tttgtcagac actgaacagt tttgtctttt ctaatccttg
     4441 ttagactact gacttaaaga gaaaacactt taaaaagcca actctgtaga caccttcaga
     4501 gtttagtttt ataataaaac tgtttgaata attagacctt tacattccta aagataaaat
     4561 aaatgtgatc ttttatctta ttttgctcaa ttaaattgtt cagaagatca aagtggtata
     4621 gacaatgtga aatttaacat tttaatactg atgttgtaca ctgctttact taacatttgg
     4681 gagaaactgc ctctgacatc aactcaagga aacacttttg ttgctattat aatcagcaaa
     4741 taaagggaca cttattcaac atga
//
