LOCUS       XM_039093813            4319 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X30, mRNA.
ACCESSION   XM_039093813
VERSION     XM_039093813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093813.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4319
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4319
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 24 ESTs, 3 long SRA
                     reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 124
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             570..4319
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X25"
                     /protein_id="XP_038949741.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLI
                     EDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAH
                     QLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKD
                     NEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQ
                     TVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSV
                     PSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVL
                     AETEGILQKLQRSVEQEESKWKVKAEESRRTIQQLRREREHLEIELEKAEVERSTYVM
                     EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDL
                     HKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMSEVIGKLFVSS"
ORIGIN      
        1 aaagcttcca tcctcacagc aaagagcaga gagacgcagg gattctggtc aacccctcgt
       61 agcgctgcag tttctagtta tttacccttc cttgcctaag gaatggccag cagccaacca
      121 gcactgcagc ctcacaatat cttgcaactt ggagtagggt taaaccgtgt cgggggccaa
      181 gtggtacttt tgtgcgaggg tcacgtgaga ccaaggctga ctgggagagg cagagtaggg
      241 ctgagtggat gaagggattc ctcagggact tccaggctga ggggtggcgt ctctgcagga
      301 cagcgcgggg catctccagg ccgccggctg cgccgacctg tccctttaag gggccggtct
      361 ccgcgtccct ttggccgcga cgcccggacg tgcggagccg ccccgccccg aagcctcccg
      421 tttcctgcgg ggcggtgcga cggcacctga gctactgcgg cggggcctcg tagcacgctg
      481 acccggaggt agagctcgcg tcgctgcgtc gtcccggcct ggttcccggc tgcgcaggag
      541 tctgcgtacg ttcacgttaa gaggagacta tggagctgca cgagtccacg tatttcgttg
      601 tccttatccc ttcagtagtt attactgtca ttttcctttt cttctggctt ttcatgaaag
      661 aaacattata tgatgatgtt cttgcaaaac aaaaaagaga acaaaagttg atttctacga
      721 aagcagataa aaagaaggca gaaaagaaga agaataaaaa gaaagaaatc cagaatggga
      781 cccttcatga atctgattct gagcatgtgc ctcaggactt taaattatct gatgcctcac
      841 ctgttgagga tgaacagttt gtacctgctc cattgagtgt ggcagaaact tccagcagtg
      901 tcagggaacg aaagaagaag gaaaagaaac aaaaaccttc actcgaagaa catatcatca
      961 aagaaagtga tgcatcaaag attccaggca aaaaagtaga acctgtccta gttacagaac
     1021 agccggcccc accccccgaa gcagctgcct tgaagaagaa agcagggcag aagaagtcta
     1081 aaaatggaag cgatgaacta gataaaaagg tggaaatggt gatggcaccc tcacaaaagc
     1141 aagacggatc acttttccat caagaaacta aacaagaagg cggaccagga aagaagaaag
     1201 gcttgtcaaa gaagcaaaag acagaaaatg ttgcagtctt ggtggacgag cccctcactc
     1261 atgccactgc ttctgttcct tcggtggata atgctgactc aagtctcatg acggataaga
     1321 gaggagttac tgatatgatt aaacctgacc aagtagaagg aatccagaaa tcgggaacaa
     1381 aaaagctgaa gattgacact gacaaagaaa atgccgaagt gaaatttaaa aatttccttc
     1441 tgtccttgaa gacgatgatg ttttctgaag atgaggctct ctgtgttgta gacctgctga
     1501 aggaaaagtc tggagtgata aaagaggcct tgaagaagtc gaataaagga gaattgagtg
     1561 gccttctgca tcagcttcag gagaaggaga ggctgctcac tgccacgaag gaagacgctg
     1621 ctgccacgaa ggagcgctgt aagcagttga cgcaggaaat gatgacagag aaagaaagaa
     1681 gcagcgtggt tatggcaagg atgaaagaac ggattggaac cctggaaaag gaacataaca
     1741 tatttcaaaa taaaatgcat gtcagttacc aagaaactca gcagatgcag atgaagtttg
     1801 agcaagttcg ggaacaaatg gaagcagaga tagctcattt gaagcaggaa aacggtatcc
     1861 tgagagatgc tgtcagtaac accacaaacc agctggagag caagcagtcc gccgagctga
     1921 ataagctgcg ccaagactgt gggaggctgg tgagcgagct gaacgagaag acaggaaagc
     1981 tgcagcaaga gggggtccag aagaagaacg ctgaacaagc cgccgcccag ttgaaggttc
     2041 aactacaaga agccgagagg cgttgggaag aagtgcagag ttacatcagg aagaggacgg
     2101 cagagcatga ggccgcacag caagacttac agagtaaatt tgtggccaaa gagaatgaag
     2161 tccagagcct gcatagtaag ctcacggaca ccttggtgtc caagcagcag ttggagcaaa
     2221 ggctaatgca gttaatggag tcagagcaga agcgggcgag ccaagaggag tccatgcaga
     2281 tccaagtgca ggatattttg gaacaaaatg aggccttgaa agctcagatt caacaattcc
     2341 attcccagat agcagctcag acctctgctt cagttctggc agaagaatta cataaagtga
     2401 ttgcagaaaa ggacaaacag ctaaagcaga ctgaagactc attagcaagc gaacaggatc
     2461 acttagcaag caaggagcag gaacttaagg atgtacagaa tgtgaatttc ttattaaagg
     2521 ctgaagtgca gaaattgcag gccctggcta aggagcaggc tgctgcagcc cacgaggtgg
     2581 agaagatgca gaagagtgtc catgtgaagg atgataagat aagactgctt gaagagcagc
     2641 tgcagcgcga agttgccagc agagtggaag agcttaagat tctgaatgac cagaataagg
     2701 cgttacagct agaagttcag aagctgcagg ccgtggtctc tgagcagcct aataaagatg
     2761 tggtggaaca aatgaaaaag tgcattcaag aaaaagatga gaagttaagg actgtggaag
     2821 agttactaga aactggactc attcaggtgg ccaccaggga ggaggagctg aacgccataa
     2881 gaacggaaaa ctcaagtctg acgaaggaag ttcaagagtt aaaggctaag cagatggatc
     2941 aggttccttt tgtgtcttta attgaagatc ttaagaaagt gatccatgag aaagatggac
     3001 agatcaagtc tgtggaagag ctcctagaag tcgaacttct caaagttgct aataaggaga
     3061 agactgttca ggctttgaaa caggaaatag agattctaaa agaagaaata ggaaatgccc
     3121 agcttgaaaa agctcaccag ttgtccgtaa cttctcaagt ccaggagctg cagaacctac
     3181 taagaggcaa ggaggaacag gtggacagta tgaaggctgc tttagaagac ctgacaggga
     3241 gagagaagtg cacacaggtg tgttcgacac cacgatttga agaactcgaa aatgtattga
     3301 aagaaaagga caatgaaatt aagagaatag aagctatatt aaaggataca aagagtgacc
     3361 tttctaagaa agcagagctg ttaaaggaag tacaagatga aaataaatta ttcaagtccc
     3421 aagtggagca gctcaatcat cagaaccacc aacaggcatc ttttccctct caggaagaat
     3481 tgcaaacagt aatttcagaa aaagagaaag aaataactga tctctgcaat gagttagagt
     3541 ctttgaagaa tgctgttgaa catcaaagga agaaaaacaa tgaaagacaa cagcaagtgg
     3601 aagctgttga gttagagtcc aaggaccttc tcaagaggtt atttccagcg gtgtctgtgc
     3661 cttctcattc gaattacagt gaatggttac gtagctttga aaaaaaggca aaagcatgca
     3721 tggctggacc ctcagacaca gaggcggtca aggttctgga gcacagattg aaagaagcta
     3781 atgaaatgca cacactgctg cagctggaat gtgaaaaata caaatccgtc cttgcagaaa
     3841 cagaagggat tttgcaaaag cttcagcgaa gtgtggaaca ggaggaaagc aaatggaagg
     3901 ttaaagcaga ggaatctcgg aggactattc agcagctaag aagagaacga gaacatttgg
     3961 aaatagagct tgagaaggcc gaagtggagc gatcgactta cgtgatggaa gtcagagagc
     4021 tgaaagatct gttgactgaa ttgcagaaaa agcttgatga ttcatattct gaagcagtaa
     4081 gacagaatga agagcttaac ttgctcaaga cacagttaaa cgaaacccat tcaaaacttc
     4141 aaaatgaaca aacagagaga aagaaggtag ctgatgattt gcacaaggct caacagtcac
     4201 tgaacttcat ccactccaaa atttcactaa aagctgctgg agacacggtt gttattgaga
     4261 ataatgatat ttccccagaa atgagtgaag taatcgggaa attattcgtt agcagttaa
//
