LOCUS       XM_039093811            4318 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X28, mRNA.
ACCESSION   XM_039093811
VERSION     XM_039093811.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093811.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4318
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4318
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 27 ESTs, 3 long SRA
                     reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 121
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             563..4318
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X23"
                     /protein_id="XP_038949739.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLI
                     EDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVD
                     SMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAEL
                     LKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNA
                     VEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRL
                     FPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECE
                     KYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHE
                     NKAMENLRREREHLEIELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVAD
                     DLHKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMSEVIGKLFVSS"
ORIGIN      
        1 ccatcctcac agcaaagagc agagagacgc agggattctg gtcaacccct cgtagcgctg
       61 cagtttctag ttatttaccc ttccttgcct aaggaatggc cagcagccaa ccagcactgc
      121 agcctcacaa tatcttgcaa cttggagtag ggttaaaccg tgtcgggggc caagtggtac
      181 ttttgtgcga gggtcacgtg agaccaaggc tgactgggag aggcagagta gggctgagtg
      241 gatgaaggga ttcctcaggg acttccaggc tgaggggtgg cgtctctgca ggacagcgcg
      301 gggcatctcc aggccgccgg ctgcgccgac ctgtcccttt aaggggccgg tctccgcgtc
      361 cctttggccg cgacgcccgg acgtgcggag ccgccccgcc ccgaagcctc ccgtttcctg
      421 cggggcggtg cgacggcacc tgagctactg cggcggggcc tcgtagcacg ctgacccgga
      481 ggtagagctc gcgtcgctgc gtcgtcccgg cctggttccc ggctgcgcag gagtctgcgt
      541 acgttcacgt taagaggaga ctatggagct gcacgagtcc acgtatttcg ttgtccttat
      601 cccttcagta gttattactg tcattttcct tttcttctgg cttttcatga aagaaacatt
      661 atatgatgat gttcttgcaa aacaaaaaag agaacaaaag ttgatttcta cgaaagcaga
      721 taaaaagaag gcagaaaaga agaagaataa aaagaaagaa atccagaatg ggacccttca
      781 tgaatctgat tctgagcatg tgcctcagga ctttaaatta tctgatgcct cacctgttga
      841 ggatgaacag tttgtacctg ctccattgag tgtggcagaa acttccagca gtgtcaggga
      901 acgaaagaag aaggaaaaga aacaaaaacc ttcactcgaa gaacatatca tcaaagaaag
      961 tgatgcatca aagattccag gcaaaaaagt agaacctgtc ctagttacag aacagccggc
     1021 cccacccccc gaagcagctg ccttgaagaa gaaagcaggg cagaagaagt ctaaaaatgg
     1081 aagcgatgaa ctagataaaa aggtggaaat ggtgatggca ccctcacaaa agcaagacgg
     1141 atcacttttc catcaagaaa ctaaacaaga aggcggacca ggaaagaaga aaggcttgtc
     1201 aaagaagcaa aagacagaaa atgttgcagt cttggtggac gagcccctca ctcatgccac
     1261 tgcttctgtt ccttcggtgg ataatgctga ctcaagtctc atgacggata agagaggagt
     1321 tactgatatg attaaacctg accaagtaga aggaatccag aaatcgggaa caaaaaagct
     1381 gaagattgac actgacaaag aaaatgccga agtgaaattt aaaaatttcc ttctgtcctt
     1441 gaagacgatg atgttttctg aagatgaggc tctctgtgtt gtagacctgc tgaaggaaaa
     1501 gtctggagtg ataaaagagg ccttgaagaa gtcgaataaa ggagaattga gtggccttct
     1561 gcatcagctt caggagaagg agaggctgct cactgccacg aaggaagacg ctgctgccac
     1621 gaaggagcgc tgtaagcagt tgacgcagga aatgatgaca gagaaagaaa gaagcagcgt
     1681 ggttatggca aggatgaaag aacggattgg aaccctggaa aaggaacata acatatttca
     1741 aaataaaatg catgtcagtt accaagaaac tcagcagatg cagatgaagt ttgagcaagt
     1801 tcgggaacaa atggaagcag agatagctca tttgaagcag gaaaacggta tcctgagaga
     1861 tgctgtcagt aacaccacaa accagctgga gagcaagcag tccgccgagc tgaataagct
     1921 gcgccaagac tgtgggaggc tggtgagcga gctgaacgag aagacaggaa agctgcagca
     1981 agagggggtc cagaagaaga acgctgaaca agccgccgcc cagttgaagg ttcaactaca
     2041 agaagccgag aggcgttggg aagaagtgca gagttacatc aggaagagga cggcagagca
     2101 tgaggccgca cagcaagact tacagagtaa atttgtggcc aaagagaatg aagtccagag
     2161 cctgcatagt aagctcacgg acaccttggt gtccaagcag cagttggagc aaaggctaat
     2221 gcagttaatg gagtcagagc agaagcgggc gagccaagag gagtccatgc agatccaagt
     2281 gcaggatatt ttggaacaaa atgaggcctt gaaagctcag attcaacaat tccattccca
     2341 gatagcagct cagacctctg cttcagttct ggcagaagaa ttacataaag tgattgcaga
     2401 aaaggacaaa cagctaaagc agactgaaga ctcattagca agcgaacagg atcacttagc
     2461 aagcaaggag caggaactta aggatgtaca gaatgtgaat ttcttattaa aggctgaagt
     2521 gcagaaattg caggccctgg ctaaggagca ggctgctgca gcccacgagg tggagaagat
     2581 gcagaagagt gtccatgtga aggatgataa gataagactg cttgaagagc agctgcagcg
     2641 cgaagttgcc agcagagtgg aagagcttaa gattctgaat gaccagaata aggcgttaca
     2701 gctagaagtt cagaagctgc aggccgtggt ctctgagcag cctaataaag atgtggtgga
     2761 acaaatgaaa aagtgcattc aagaaaaaga tgagaagtta aggactgtgg aagagttact
     2821 agaaactgga ctcattcagg tggccaccag ggaggaggag ctgaacgcca taagaacgga
     2881 aaactcaagt ctgacgaagg aagttcaaga gttaaaggct aagcagatgg atcaggttcc
     2941 ttttgtgtct ttaattgaag atcttaagaa agtgatccat gagaaagatg gacagatcaa
     3001 gtctgtggaa gagctcctag aagtcgaact tctcaaagtt gctaataagg agaagactgt
     3061 tcagttgtcc gtaacttctc aagtccagga gctgcagaac ctactaagag gcaaggagga
     3121 acaggtggac agtatgaagg ctgctttaga agacctgaca gggagagaga agtgcacaca
     3181 ggtgtgttcg acaccacgat ttgaagaact cgaaaatgta ttgaaagaaa aggacaatga
     3241 aattaagaga atagaagcta tattaaagga tacaaagagt gacctttcta agaaagcaga
     3301 gctgttaaag gaagtacaag atgaaaataa attattcaag tcccaagtgg agcagctcaa
     3361 tcatcagaac caccaacagg catcttttcc ctctcaggaa gaattgcaaa cagtaatttc
     3421 agaaaaagag aaagaaataa ctgatctctg caatgagtta gagtctttga agaatgctgt
     3481 tgaacatcaa aggaagaaaa acaatgacct tcgggagaaa aactgggaag cgatggaggc
     3541 attggcatca actgaaaaaa tactgcagga cagagtgaac aagacttcca aggaaagaca
     3601 acagcaagtg gaagctgttg agttagagtc caaggacctt ctcaagaggt tatttccagc
     3661 ggtgtctgtg ccttctcatt cgaattacag tgaatggtta cgtagctttg aaaaaaaggc
     3721 aaaagcatgc atggctggac cctcagacac agaggcggtc aaggttctgg agcacagatt
     3781 gaaagaagct aatgaaatgc acacactgct gcagctggaa tgtgaaaaat acaaatccgt
     3841 ccttgcagaa acagaaggga ttttgcaaaa gcttcagcga agtgtggaac aggaggaaag
     3901 caaatggaag gttaaagcag aggaatctcg gaggactatt cagcagatgc agtcctcctt
     3961 cacagcctct gagcaagagc tagagcgact aagacacgag aacaaggcta tggagaatct
     4021 aagaagagaa cgagaacatt tggaaataga gcttgagaag gccgaagtgg agcgatcgac
     4081 ttacgtgatg gaagtcagag agctcaagac acagttaaac gaaacccatt caaaacttca
     4141 aaatgaacaa acagagagaa agaaggtagc tgatgatttg cacaaggctc aacagtcact
     4201 gaacttcatc cactccaaaa tttcactaaa agctgctgga gacacggttg ttattgagaa
     4261 taatgatatt tccccagaaa tgagtgaagt aatcgggaaa ttattcgtta gcagttaa
//
