LOCUS       XM_039093794            5071 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X5, mRNA.
ACCESSION   XM_039093794
VERSION     XM_039093794.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5071
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5071
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 35 ESTs, 5 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 26 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             569..4561
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X1"
                     /protein_id="XP_038949722.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVLVP
                     FVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQ
                     LEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV
                     LKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPS
                     QEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQ
                     DRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGP
                     SDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVK
                     AEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVM
                     EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDL
                     HKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMGSPEKETMSVSLTQTVAHLQQLLQ
                     EVNQQLTKEK"
ORIGIN      
        1 aagcttccat cctcacagca aagagcagag agacgcaggg attctggtca acccctcgta
       61 gcgctgcagt ttctagttat ttacccttcc ttgcctaagg aatggccagc agccaaccag
      121 cactgcagcc tcacaatatc ttgcaacttg gagtagggtt aaaccgtgtc gggggccaag
      181 tggtactttt gtgcgagggt cacgtgagac caaggctgac tgggagaggc agagtagggc
      241 tgagtggatg aagggattcc tcagggactt ccaggctgag gggtggcgtc tctgcaggac
      301 agcgcggggc atctccaggc cgccggctgc gccgacctgt ccctttaagg ggccggtctc
      361 cgcgtccctt tggccgcgac gcccggacgt gcggagccgc cccgccccga agcctcccgt
      421 ttcctgcggg gcggtgcgac ggcacctgag ctactgcggc ggggcctcgt agcacgctga
      481 cccggaggta gagctcgcgt cgctgcgtcg tcccggcctg gttcccggct gcgcaggagt
      541 ctgcgtacgt tcacgttaag aggagactat ggagctgcac gagtccacgt atttcgttgt
      601 ccttatccct tcagtagtta ttactgtcat tttccttttc ttctggcttt tcatgaaaga
      661 aacattatat gatgatgttc ttgcaaaaca aaaaagagaa caaaagttga tttctacgaa
      721 agcagataaa aagaaggcag aaaagaagaa gaataaaaag aaagaaatcc agaatgggac
      781 ccttcatgaa tctgattctg agcatgtgcc tcaggacttt aaattatctg atgcctcacc
      841 tgttgaggat gaacagtttg tacctgctcc attgagtgtg gcagaaactt ccagcagtgt
      901 cagggaacga aagaagaagg aaaagaaaca aaaaccttca ctcgaagaac atatcatcaa
      961 agaaagtgat gcatcaaaga ttccaggcaa aaaagtagaa cctgtcctag ttacagaaca
     1021 gccggcccca ccccccgaag cagctgcctt gaagaagaaa gcagggcaga agaagtctaa
     1081 aaatggaagc gatgaactag ataaaaaggt ggaaatggtg atggcaccct cacaaaagca
     1141 agacggatca cttttccatc aagaaactaa acaagaaggc ggaccaggaa agaagaaagg
     1201 cttgtcaaag aagcaaaaga cagaaaatgt tgcagtcttg gtggacgagc ccctcactca
     1261 tgccactgct tctgttcctt cggtggataa tgctgactca agtctcatga cggataagag
     1321 aggagttact gatatgatta aacctgacca agtagaagga atccagaaat cgggaacaaa
     1381 aaagctgaag attgacactg acaaagaaaa tgccgaagtg aaatttaaaa atttccttct
     1441 gtccttgaag acgatgatgt tttctgaaga tgaggctctc tgtgttgtag acctgctgaa
     1501 ggaaaagtct ggagtgataa aagaggcctt gaagaagtcg aataaaggag aattgagtgg
     1561 ccttctgcat cagcttcagg agaaggagag gctgctcact gccacgaagg aagacgctgc
     1621 tgccacgaag gagcgctgta agcagttgac gcaggaaatg atgacagaga aagaaagaag
     1681 cagcgtggtt atggcaagga tgaaagaacg gattggaacc ctggaaaagg aacataacat
     1741 atttcaaaat aaaatgcatg tcagttacca agaaactcag cagatgcaga tgaagtttga
     1801 gcaagttcgg gaacaaatgg aagcagagat agctcatttg aagcaggaaa acggtatcct
     1861 gagagatgct gtcagtaaca ccacaaacca gctggagagc aagcagtccg ccgagctgaa
     1921 taagctgcgc caagactgtg ggaggctggt gagcgagctg aacgagaaga caggaaagct
     1981 gcagcaagag ggggtccaga agaagaacgc tgaacaagcc gccgcccagt tgaaggttca
     2041 actacaagaa gccgagaggc gttgggaaga agtgcagagt tacatcagga agaggacggc
     2101 agagcatgag gccgcacagc aagacttaca gagtaaattt gtggccaaag agaatgaagt
     2161 ccagagcctg catagtaagc tcacggacac cttggtgtcc aagcagcagt tggagcaaag
     2221 gctaatgcag ttaatggagt cagagcagaa gcgggcgagc caagaggagt ccatgcagat
     2281 ccaagtgcag gatattttgg aacaaaatga ggccttgaaa gctcagattc aacaattcca
     2341 ttcccagata gcagctcaga cctctgcttc agttctggca gaagaattac ataaagtgat
     2401 tgcagaaaag gacaaacagc taaagcagac tgaagactca ttagcaagcg aacaggatca
     2461 cttagcaagc aaggagcagg aacttaagga tgtacagaat gtgaatttct tattaaaggc
     2521 tgaagtgcag aaattgcagg ccctggctaa ggagcaggct gctgcagccc acgaggtgga
     2581 gaagatgcag aagagtgtcc atgtgaagga tgataagata agactgcttg aagagcagct
     2641 gcagcgcgaa gttgccagca gagtggaaga gcttaagatt ctgaatgacc agaataaggc
     2701 gttacagcta gaagttcaga agctgcaggc cgtggtctct gagcagccta ataaagatgt
     2761 ggtggaacaa atgaaaaagt gcattcaaga aaaagatgag aagttaagga ctgtggaaga
     2821 gttactagaa actggactca ttcaggtggc caccagggag gaggagctga acgccataag
     2881 aacggaaaac tcaagtctga cgaaggaagt tcaagagtta aaggctaagc agatggatca
     2941 ggtagcgtat gtgttggttc cttttgtgtc tttaattgaa gatcttaaga aagtgatcca
     3001 tgagaaagat ggacagatca agtctgtgga agagctccta gaagtcgaac ttctcaaagt
     3061 tgctaataag gagaagactg ttcaggcttt gaaacaggaa atagagattc taaaagaaga
     3121 aataggaaat gcccagcttg aaaaagctca ccagttgtcc gtaacttctc aagtccagga
     3181 gctgcagaac ctactaagag gcaaggagga acaggtggac agtatgaagg ctgctttaga
     3241 agacctgaca gggagagaga agtgcacaca ggtgtgttcg acaccacgat ttgaagaact
     3301 cgaaaatgta ttgaaagaaa aggacaatga aattaagaga atagaagcta tattaaagga
     3361 tacaaagagt gacctttcta agaaagcaga gctgttaaag gaagtacaag atgaaaataa
     3421 attattcaag tcccaagtgg agcagctcaa tcatcagaac caccaacagg catcttttcc
     3481 ctctcaggaa gaattgcaaa cagtaatttc agaaaaagag aaagaaataa ctgatctctg
     3541 caatgagtta gagtctttga agaatgctgt tgaacatcaa aggaagaaaa acaatgacct
     3601 tcgggagaaa aactgggaag cgatggaggc attggcatca actgaaaaaa tactgcagga
     3661 cagagtgaac aagacttcca aggaaagaca acagcaagtg gaagctgttg agttagagtc
     3721 caaggacctt ctcaagaggt tatttccagc ggtgtctgtg ccttctcatt cgaattacag
     3781 tgaatggtta cgtagctttg aaaaaaaggc aaaagcatgc atggctggac cctcagacac
     3841 agaggcggtc aaggttctgg agcacagatt gaaagaagct aatgaaatgc acacactgct
     3901 gcagctggaa tgtgaaaaat acaaatccgt ccttgcagaa acagaaggga ttttgcaaaa
     3961 gcttcagcga agtgtggaac aggaggaaag caaatggaag gttaaagcag aggaatctcg
     4021 gaggactatt cagcagatgc agtcctcctt cacagcctct gagcaagagc tagagcgact
     4081 aagacacgag aacaaggcta tggagaatct aagaagagaa cgagaacatt tggaaataga
     4141 gcttgagaag gccgaagtgg agcgatcgac ttacgtgatg gaagtcagag agctgaaaga
     4201 tctgttgact gaattgcaga aaaagcttga tgattcatat tctgaagcag taagacagaa
     4261 tgaagagctt aacttgctca agacacagtt aaacgaaacc cattcaaaac ttcaaaatga
     4321 acaaacagag agaaagaagg tagctgatga tttgcacaag gctcaacagt cactgaactt
     4381 catccactcc aaaatttcac taaaagctgc tggagacacg gttgttattg agaataatga
     4441 tatttcccca gaaatggggt ctcctgagaa agagacgatg tctgtgagtc tcactcagac
     4501 tgtggcacac ttacagcagt tgcttcagga agtaaatcag cagctcacaa aggagaagtg
     4561 atccagtgtg gggtacggac accaagcacg ctgcttcctt agtgaagtaa tcgggaaatt
     4621 attcgttagc agttaacaga aggcgttgta ttatattttg ccaaattaaa gccttattta
     4681 tgttttaccc tttctacttt gtcagacact gaacagtttt gtcttttcta atccttgtta
     4741 gactactgac ttaaagagaa aacactttaa aaagccaact ctgtagacac cttcagagtt
     4801 tagttttata ataaaactgt ttgaataatt agacctttac attcctaaag ataaaataaa
     4861 tgtgatcttt tatcttattt tgctcaatta aattgttcag aagatcaaag tggtatagac
     4921 aatgtgaaat ttaacatttt aatactgatg ttgtacactg ctttacttaa catttgggag
     4981 aaactgcctc tgacatcaac tcaaggaaac acttttgttg ctattataat cagcaaataa
     5041 agggacactt attcaacatg actcactcta a
//
