LOCUS       XM_039093792            5043 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X3, mRNA.
ACCESSION   XM_039093792
VERSION     XM_039093792.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093792.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5043
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 47 ESTs, 8 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 95 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             579..4571
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X1"
                     /protein_id="XP_038949720.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVLVP
                     FVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQ
                     LEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV
                     LKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPS
                     QEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQ
                     DRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGP
                     SDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVK
                     AEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVM
                     EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDL
                     HKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMGSPEKETMSVSLTQTVAHLQQLLQ
                     EVNQQLTKEK"
ORIGIN      
        1 cggggactcc ggtgcgctgg ggcgaggggt tgggagagcg ctcgcccggt aggcctccgc
       61 ccgggggtcg cagtgtgtag cgtccgccca ggccgcgccg ccgctggctc gctctgagga
      121 ggttccggct ccagggttcc ggctgggcga tttccccacg gccgtcaggt ccgaccccag
      181 ctccgcgagt ggcccgagct cttgggccgt ctcctctgag ggcgaggtcg gcccgaccgg
      241 gctgcggggt gaccgaggaa cctattttta gcccggctcg caggccccgg ggctggcggg
      301 cggattaagg ctctgaagag ggtgaccgga gggagcgcca cgcctcgggc gcctgggccc
      361 ggggtgggcc acatgtgagc ggtgctggag cggatggccc ctcgcttgtc ccggagtgcg
      421 gcccctccca ccaccaggtt gtagagttag ggggaattct gcgaagttct ccctctctcc
      481 caggggtgtg tccgccttgt tgcccaacaa tggaatttgg gacgtcccgg atctagccgc
      541 gttcgggagt ctgcgtacgt tcacgttaag aggagactat ggagctgcac gagtccacgt
      601 atttcgttgt ccttatccct tcagtagtta ttactgtcat tttccttttc ttctggcttt
      661 tcatgaaaga aacattatat gatgatgttc ttgcaaaaca aaaaagagaa caaaagttga
      721 tttctacgaa agcagataaa aagaaggcag aaaagaagaa gaataaaaag aaagaaatcc
      781 agaatgggac ccttcatgaa tctgattctg agcatgtgcc tcaggacttt aaattatctg
      841 atgcctcacc tgttgaggat gaacagtttg tacctgctcc attgagtgtg gcagaaactt
      901 ccagcagtgt cagggaacga aagaagaagg aaaagaaaca aaaaccttca ctcgaagaac
      961 atatcatcaa agaaagtgat gcatcaaaga ttccaggcaa aaaagtagaa cctgtcctag
     1021 ttacagaaca gccggcccca ccccccgaag cagctgcctt gaagaagaaa gcagggcaga
     1081 agaagtctaa aaatggaagc gatgaactag ataaaaaggt ggaaatggtg atggcaccct
     1141 cacaaaagca agacggatca cttttccatc aagaaactaa acaagaaggc ggaccaggaa
     1201 agaagaaagg cttgtcaaag aagcaaaaga cagaaaatgt tgcagtcttg gtggacgagc
     1261 ccctcactca tgccactgct tctgttcctt cggtggataa tgctgactca agtctcatga
     1321 cggataagag aggagttact gatatgatta aacctgacca agtagaagga atccagaaat
     1381 cgggaacaaa aaagctgaag attgacactg acaaagaaaa tgccgaagtg aaatttaaaa
     1441 atttccttct gtccttgaag acgatgatgt tttctgaaga tgaggctctc tgtgttgtag
     1501 acctgctgaa ggaaaagtct ggagtgataa aagaggcctt gaagaagtcg aataaaggag
     1561 aattgagtgg ccttctgcat cagcttcagg agaaggagag gctgctcact gccacgaagg
     1621 aagacgctgc tgccacgaag gagcgctgta agcagttgac gcaggaaatg atgacagaga
     1681 aagaaagaag cagcgtggtt atggcaagga tgaaagaacg gattggaacc ctggaaaagg
     1741 aacataacat atttcaaaat aaaatgcatg tcagttacca agaaactcag cagatgcaga
     1801 tgaagtttga gcaagttcgg gaacaaatgg aagcagagat agctcatttg aagcaggaaa
     1861 acggtatcct gagagatgct gtcagtaaca ccacaaacca gctggagagc aagcagtccg
     1921 ccgagctgaa taagctgcgc caagactgtg ggaggctggt gagcgagctg aacgagaaga
     1981 caggaaagct gcagcaagag ggggtccaga agaagaacgc tgaacaagcc gccgcccagt
     2041 tgaaggttca actacaagaa gccgagaggc gttgggaaga agtgcagagt tacatcagga
     2101 agaggacggc agagcatgag gccgcacagc aagacttaca gagtaaattt gtggccaaag
     2161 agaatgaagt ccagagcctg catagtaagc tcacggacac cttggtgtcc aagcagcagt
     2221 tggagcaaag gctaatgcag ttaatggagt cagagcagaa gcgggcgagc caagaggagt
     2281 ccatgcagat ccaagtgcag gatattttgg aacaaaatga ggccttgaaa gctcagattc
     2341 aacaattcca ttcccagata gcagctcaga cctctgcttc agttctggca gaagaattac
     2401 ataaagtgat tgcagaaaag gacaaacagc taaagcagac tgaagactca ttagcaagcg
     2461 aacaggatca cttagcaagc aaggagcagg aacttaagga tgtacagaat gtgaatttct
     2521 tattaaaggc tgaagtgcag aaattgcagg ccctggctaa ggagcaggct gctgcagccc
     2581 acgaggtgga gaagatgcag aagagtgtcc atgtgaagga tgataagata agactgcttg
     2641 aagagcagct gcagcgcgaa gttgccagca gagtggaaga gcttaagatt ctgaatgacc
     2701 agaataaggc gttacagcta gaagttcaga agctgcaggc cgtggtctct gagcagccta
     2761 ataaagatgt ggtggaacaa atgaaaaagt gcattcaaga aaaagatgag aagttaagga
     2821 ctgtggaaga gttactagaa actggactca ttcaggtggc caccagggag gaggagctga
     2881 acgccataag aacggaaaac tcaagtctga cgaaggaagt tcaagagtta aaggctaagc
     2941 agatggatca ggtagcgtat gtgttggttc cttttgtgtc tttaattgaa gatcttaaga
     3001 aagtgatcca tgagaaagat ggacagatca agtctgtgga agagctccta gaagtcgaac
     3061 ttctcaaagt tgctaataag gagaagactg ttcaggcttt gaaacaggaa atagagattc
     3121 taaaagaaga aataggaaat gcccagcttg aaaaagctca ccagttgtcc gtaacttctc
     3181 aagtccagga gctgcagaac ctactaagag gcaaggagga acaggtggac agtatgaagg
     3241 ctgctttaga agacctgaca gggagagaga agtgcacaca ggtgtgttcg acaccacgat
     3301 ttgaagaact cgaaaatgta ttgaaagaaa aggacaatga aattaagaga atagaagcta
     3361 tattaaagga tacaaagagt gacctttcta agaaagcaga gctgttaaag gaagtacaag
     3421 atgaaaataa attattcaag tcccaagtgg agcagctcaa tcatcagaac caccaacagg
     3481 catcttttcc ctctcaggaa gaattgcaaa cagtaatttc agaaaaagag aaagaaataa
     3541 ctgatctctg caatgagtta gagtctttga agaatgctgt tgaacatcaa aggaagaaaa
     3601 acaatgacct tcgggagaaa aactgggaag cgatggaggc attggcatca actgaaaaaa
     3661 tactgcagga cagagtgaac aagacttcca aggaaagaca acagcaagtg gaagctgttg
     3721 agttagagtc caaggacctt ctcaagaggt tatttccagc ggtgtctgtg ccttctcatt
     3781 cgaattacag tgaatggtta cgtagctttg aaaaaaaggc aaaagcatgc atggctggac
     3841 cctcagacac agaggcggtc aaggttctgg agcacagatt gaaagaagct aatgaaatgc
     3901 acacactgct gcagctggaa tgtgaaaaat acaaatccgt ccttgcagaa acagaaggga
     3961 ttttgcaaaa gcttcagcga agtgtggaac aggaggaaag caaatggaag gttaaagcag
     4021 aggaatctcg gaggactatt cagcagatgc agtcctcctt cacagcctct gagcaagagc
     4081 tagagcgact aagacacgag aacaaggcta tggagaatct aagaagagaa cgagaacatt
     4141 tggaaataga gcttgagaag gccgaagtgg agcgatcgac ttacgtgatg gaagtcagag
     4201 agctgaaaga tctgttgact gaattgcaga aaaagcttga tgattcatat tctgaagcag
     4261 taagacagaa tgaagagctt aacttgctca agacacagtt aaacgaaacc cattcaaaac
     4321 ttcaaaatga acaaacagag agaaagaagg tagctgatga tttgcacaag gctcaacagt
     4381 cactgaactt catccactcc aaaatttcac taaaagctgc tggagacacg gttgttattg
     4441 agaataatga tatttcccca gaaatggggt ctcctgagaa agagacgatg tctgtgagtc
     4501 tcactcagac tgtggcacac ttacagcagt tgcttcagga agtaaatcag cagctcacaa
     4561 aggagaagtg atccagtgtg ggagtgaagt aatcgggaaa ttattcgtta gcagttaaca
     4621 gaaggcgttg tattatattt tgccaaatta aagccttatt tatgttttac cctttctact
     4681 ttgtcagaca ctgaacagtt ttgtcttttc taatccttgt tagactactg acttaaagag
     4741 aaaacacttt aaaaagccaa ctctgtagac accttcagag tttagtttta taataaaact
     4801 gtttgaataa ttagaccttt acattcctaa agataaaata aatgtgatct tttatcttat
     4861 tttgctcaat taaattgttc agaagatcaa agtggtatag acaatgtgaa atttaacatt
     4921 ttaatactga tgttgtacac tgctttactt aacatttggg agaaactgcc tctgacatca
     4981 actcaaggaa acacttttgt tgctattata atcagcaaat aaagggacac ttattcaaca
     5041 tga
//
