LOCUS       XM_039093790            5031 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kinectin 1 (Ktn1), transcript variant
            X1, mRNA.
ACCESSION   XM_039093790
VERSION     XM_039093790.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093790.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5031
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5031
                     /gene="Ktn1"
                     /note="kinectin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 49 ESTs, 10 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 109 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
     CDS             567..4559
                     /gene="Ktn1"
                     /codon_start=1
                     /product="kinectin isoform X1"
                     /protein_id="XP_038949718.1"
                     /db_xref="GeneID:361029"
                     /db_xref="RGD:1308719"
                     /translation="MELHESTYFVVLIPSVVITVIFLFFWLFMKETLYDDVLAKQKRE
                     QKLISTKADKKKAEKKKNKKKEIQNGTLHESDSEHVPQDFKLSDASPVEDEQFVPAPL
                     SVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPVLVTEQPAPPPEAAA
                     LKKKAGQKKSKNGSDELDKKVEMVMAPSQKQDGSLFHQETKQEGGPGKKKGLSKKQKT
                     ENVAVLVDEPLTHATASVPSVDNADSSLMTDKRGVTDMIKPDQVEGIQKSGTKKLKID
                     TDKENAEVKFKNFLLSLKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNKGELSGLLH
                     QLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIF
                     QNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL
                     NKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRK
                     RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE
                     ESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS
                     LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD
                     KIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ
                     EKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVLVP
                     FVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQ
                     LEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV
                     LKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPS
                     QEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQ
                     DRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGP
                     SDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVK
                     AEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVM
                     EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDL
                     HKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMGSPEKETMSVSLTQTVAHLQQLLQ
                     EVNQQLTKEK"
ORIGIN      
        1 gcttccatcc tcacagcaaa gagcagagag acgcagggat tctggtcaac ccctcgtagc
       61 gctgcagttt ctagttattt acccttcctt gcctaaggaa tggccagcag ccaaccagca
      121 ctgcagcctc acaatatctt gcaacttgga gtagggttaa accgtgtcgg gggccaagtg
      181 gtacttttgt gcgagggtca cgtgagacca aggctgactg ggagaggcag agtagggctg
      241 agtggatgaa gggattcctc agggacttcc aggctgaggg gtggcgtctc tgcaggacag
      301 cgcggggcat ctccaggccg ccggctgcgc cgacctgtcc ctttaagggg ccggtctccg
      361 cgtccctttg gccgcgacgc ccggacgtgc ggagccgccc cgccccgaag cctcccgttt
      421 cctgcggggc ggtgcgacgg cacctgagct actgcggcgg ggcctcgtag cacgctgacc
      481 cggaggtaga gctcgcgtcg ctgcgtcgtc ccggcctggt tcccggctgc gcaggagtct
      541 gcgtacgttc acgttaagag gagactatgg agctgcacga gtccacgtat ttcgttgtcc
      601 ttatcccttc agtagttatt actgtcattt tccttttctt ctggcttttc atgaaagaaa
      661 cattatatga tgatgttctt gcaaaacaaa aaagagaaca aaagttgatt tctacgaaag
      721 cagataaaaa gaaggcagaa aagaagaaga ataaaaagaa agaaatccag aatgggaccc
      781 ttcatgaatc tgattctgag catgtgcctc aggactttaa attatctgat gcctcacctg
      841 ttgaggatga acagtttgta cctgctccat tgagtgtggc agaaacttcc agcagtgtca
      901 gggaacgaaa gaagaaggaa aagaaacaaa aaccttcact cgaagaacat atcatcaaag
      961 aaagtgatgc atcaaagatt ccaggcaaaa aagtagaacc tgtcctagtt acagaacagc
     1021 cggccccacc ccccgaagca gctgccttga agaagaaagc agggcagaag aagtctaaaa
     1081 atggaagcga tgaactagat aaaaaggtgg aaatggtgat ggcaccctca caaaagcaag
     1141 acggatcact tttccatcaa gaaactaaac aagaaggcgg accaggaaag aagaaaggct
     1201 tgtcaaagaa gcaaaagaca gaaaatgttg cagtcttggt ggacgagccc ctcactcatg
     1261 ccactgcttc tgttccttcg gtggataatg ctgactcaag tctcatgacg gataagagag
     1321 gagttactga tatgattaaa cctgaccaag tagaaggaat ccagaaatcg ggaacaaaaa
     1381 agctgaagat tgacactgac aaagaaaatg ccgaagtgaa atttaaaaat ttccttctgt
     1441 ccttgaagac gatgatgttt tctgaagatg aggctctctg tgttgtagac ctgctgaagg
     1501 aaaagtctgg agtgataaaa gaggccttga agaagtcgaa taaaggagaa ttgagtggcc
     1561 ttctgcatca gcttcaggag aaggagaggc tgctcactgc cacgaaggaa gacgctgctg
     1621 ccacgaagga gcgctgtaag cagttgacgc aggaaatgat gacagagaaa gaaagaagca
     1681 gcgtggttat ggcaaggatg aaagaacgga ttggaaccct ggaaaaggaa cataacatat
     1741 ttcaaaataa aatgcatgtc agttaccaag aaactcagca gatgcagatg aagtttgagc
     1801 aagttcggga acaaatggaa gcagagatag ctcatttgaa gcaggaaaac ggtatcctga
     1861 gagatgctgt cagtaacacc acaaaccagc tggagagcaa gcagtccgcc gagctgaata
     1921 agctgcgcca agactgtggg aggctggtga gcgagctgaa cgagaagaca ggaaagctgc
     1981 agcaagaggg ggtccagaag aagaacgctg aacaagccgc cgcccagttg aaggttcaac
     2041 tacaagaagc cgagaggcgt tgggaagaag tgcagagtta catcaggaag aggacggcag
     2101 agcatgaggc cgcacagcaa gacttacaga gtaaatttgt ggccaaagag aatgaagtcc
     2161 agagcctgca tagtaagctc acggacacct tggtgtccaa gcagcagttg gagcaaaggc
     2221 taatgcagtt aatggagtca gagcagaagc gggcgagcca agaggagtcc atgcagatcc
     2281 aagtgcagga tattttggaa caaaatgagg ccttgaaagc tcagattcaa caattccatt
     2341 cccagatagc agctcagacc tctgcttcag ttctggcaga agaattacat aaagtgattg
     2401 cagaaaagga caaacagcta aagcagactg aagactcatt agcaagcgaa caggatcact
     2461 tagcaagcaa ggagcaggaa cttaaggatg tacagaatgt gaatttctta ttaaaggctg
     2521 aagtgcagaa attgcaggcc ctggctaagg agcaggctgc tgcagcccac gaggtggaga
     2581 agatgcagaa gagtgtccat gtgaaggatg ataagataag actgcttgaa gagcagctgc
     2641 agcgcgaagt tgccagcaga gtggaagagc ttaagattct gaatgaccag aataaggcgt
     2701 tacagctaga agttcagaag ctgcaggccg tggtctctga gcagcctaat aaagatgtgg
     2761 tggaacaaat gaaaaagtgc attcaagaaa aagatgagaa gttaaggact gtggaagagt
     2821 tactagaaac tggactcatt caggtggcca ccagggagga ggagctgaac gccataagaa
     2881 cggaaaactc aagtctgacg aaggaagttc aagagttaaa ggctaagcag atggatcagg
     2941 tagcgtatgt gttggttcct tttgtgtctt taattgaaga tcttaagaaa gtgatccatg
     3001 agaaagatgg acagatcaag tctgtggaag agctcctaga agtcgaactt ctcaaagttg
     3061 ctaataagga gaagactgtt caggctttga aacaggaaat agagattcta aaagaagaaa
     3121 taggaaatgc ccagcttgaa aaagctcacc agttgtccgt aacttctcaa gtccaggagc
     3181 tgcagaacct actaagaggc aaggaggaac aggtggacag tatgaaggct gctttagaag
     3241 acctgacagg gagagagaag tgcacacagg tgtgttcgac accacgattt gaagaactcg
     3301 aaaatgtatt gaaagaaaag gacaatgaaa ttaagagaat agaagctata ttaaaggata
     3361 caaagagtga cctttctaag aaagcagagc tgttaaagga agtacaagat gaaaataaat
     3421 tattcaagtc ccaagtggag cagctcaatc atcagaacca ccaacaggca tcttttccct
     3481 ctcaggaaga attgcaaaca gtaatttcag aaaaagagaa agaaataact gatctctgca
     3541 atgagttaga gtctttgaag aatgctgttg aacatcaaag gaagaaaaac aatgaccttc
     3601 gggagaaaaa ctgggaagcg atggaggcat tggcatcaac tgaaaaaata ctgcaggaca
     3661 gagtgaacaa gacttccaag gaaagacaac agcaagtgga agctgttgag ttagagtcca
     3721 aggaccttct caagaggtta tttccagcgg tgtctgtgcc ttctcattcg aattacagtg
     3781 aatggttacg tagctttgaa aaaaaggcaa aagcatgcat ggctggaccc tcagacacag
     3841 aggcggtcaa ggttctggag cacagattga aagaagctaa tgaaatgcac acactgctgc
     3901 agctggaatg tgaaaaatac aaatccgtcc ttgcagaaac agaagggatt ttgcaaaagc
     3961 ttcagcgaag tgtggaacag gaggaaagca aatggaaggt taaagcagag gaatctcgga
     4021 ggactattca gcagatgcag tcctccttca cagcctctga gcaagagcta gagcgactaa
     4081 gacacgagaa caaggctatg gagaatctaa gaagagaacg agaacatttg gaaatagagc
     4141 ttgagaaggc cgaagtggag cgatcgactt acgtgatgga agtcagagag ctgaaagatc
     4201 tgttgactga attgcagaaa aagcttgatg attcatattc tgaagcagta agacagaatg
     4261 aagagcttaa cttgctcaag acacagttaa acgaaaccca ttcaaaactt caaaatgaac
     4321 aaacagagag aaagaaggta gctgatgatt tgcacaaggc tcaacagtca ctgaacttca
     4381 tccactccaa aatttcacta aaagctgctg gagacacggt tgttattgag aataatgata
     4441 tttccccaga aatggggtct cctgagaaag agacgatgtc tgtgagtctc actcagactg
     4501 tggcacactt acagcagttg cttcaggaag taaatcagca gctcacaaag gagaagtgat
     4561 ccagtgtggg agtgaagtaa tcgggaaatt attcgttagc agttaacaga aggcgttgta
     4621 ttatattttg ccaaattaaa gccttattta tgttttaccc tttctacttt gtcagacact
     4681 gaacagtttt gtcttttcta atccttgtta gactactgac ttaaagagaa aacactttaa
     4741 aaagccaact ctgtagacac cttcagagtt tagttttata ataaaactgt ttgaataatt
     4801 agacctttac attcctaaag ataaaataaa tgtgatcttt tatcttattt tgctcaatta
     4861 aattgttcag aagatcaaag tggtatagac aatgtgaaat ttaacatttt aatactgatg
     4921 ttgtacactg ctttacttaa catttgggag aaactgcctc tgacatcaac tcaaggaaac
     4981 acttttgttg ctattataat cagcaaataa agggacactt attcaacatg a
//
