LOCUS       XM_017595335            3208 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus keratin 78 (Krt78), mRNA.
ACCESSION   XM_017595335
VERSION     XM_017595335.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017595335.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017595335.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3208
                     /gene="Krt78"
                     /note="keratin 78; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 1 Protein, and
                     78% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:315324"
                     /db_xref="RGD:1591341"
     CDS             1..3042
                     /gene="Krt78"
                     /codon_start=1
                     /product="keratin, type II cytoskeletal 78"
                     /protein_id="XP_017450824.1"
                     /db_xref="GeneID:315324"
                     /db_xref="RGD:1591341"
                     /translation="MSLSPCRAQRGFSARSACSDFSGARGRTSFSSRSLSSSRRCRGS
                     SCGRAWGAETRQGVRFGQGKGGPGLSQCPPGGIQAVTIDQSLLTPLKIEVDPQFQVVK
                     TQETQEIRTLNNQFASFIDKVRFLEQQNKVLETKWELLQQLQGNRSPQGLECVFEACL
                     ARLRQQLEELQRERRALDSELKTYQDQEDEYKTKYDQEAYKHASVQNDFVVLKKDVDE
                     VFQSKMDLEGNLESLREHVCFLTRLYEEELGQLQTQANDMSVVLSMDNSRCLDFSDII
                     AEVRARYEEITRTSKAEAEAVFQTKYQELQESAQLQGNSMKEVQVQISQLRQVIQKLQ
                     SQIGSLRKQNDSLQSAIADAEQQGEMALRDAQAKLDELEGALRAAKQDMAQMLRDYQE
                     LMGTKLSLDVEIAMYRRLLESEECRISKEHTSQVTVSIEEGSIVPGRSCGGQVVIPGR
                     SCGGQVVIPGGVCSGQVVIPGRNCGGQVVIPGRTCGGQVVIPGRTCGGQVTMPGRECG
                     GQVTVPGREHGGQVIVPGREHGGQVTVPGREHGGQVTVPGREHGGQVTVPGREHGGQV
                     MVPGREHGGQVTIPGRECGGQVTIPGREYGGQVTVPGREHGGQVTVPGREYGGQVTVP
                     GREHGGQVTIPGRECGGQVTIPGREYGGQVTVPGREYGGQVTVSGREYGGQVTVPGRE
                     YGGQVTVPGRECGGQVTVPGREYGGQVTVPGREYGGQVTVPGRECGGQVTVPGREYGG
                     QVTVPGREYGGQVTVPGREYGGQVTVPGRECGGQVTVPGRECGGQVTVPGREYGGQVT
                     VPGREYGGQVTMPGRECGGQVIVPGRECGGQVTMPGRECGGQVTVPGREYGGQVTMPG
                     RECGGQVTVSGREYGGQVMLPGRECGGQVTVPGRECGGQVTMPGRECGGQVTMPGREH
                     GGQVTVPGRECGGQVMLPGRECGGQVGTCDHRGWKGSFGSGGCSSIVTGGFDVPQGSG
                     YSPIMGSCSVSGSGFSSGSGSSCRTILKKTMESSRKTSVIY"
ORIGIN      
        1 atgtctctct ctccatgccg ggcccagagg ggcttcagcg ctcgctcagc ctgctctgat
       61 ttttcggggg ctcgaggcag gaccagcttc agtagcagga gccttagctc ctccaggaga
      121 tgcagaggaa gctcttgtgg gagggcctgg ggggcagaga ccaggcaagg agtacggttt
      181 ggacagggta agggagggcc tgggctttct cagtgccctc cagggggcat ccaagcagtg
      241 accatcgacc agagtctgct gaccccactg aagatcgagg ttgaccccca gttccaggtg
      301 gtgaagacgc aggagactca agagatcaga accctcaaca accagttcgc ctccttcatt
      361 gacaaggtac gcttcctgga gcagcagaac aaggttctgg agaccaagtg ggagctgctg
      421 cagcagctgc aggggaatcg tagccctcag ggcctggaat gtgtcttcga agcctgcctg
      481 gcccggctca ggcagcagct ggaagagctg cagagagagc ggagggctct tgactctgag
      541 ctgaagacct accaggacca ggaggatgaa tacaagacca agtatgacca ggaagcatac
      601 aagcacgcct cggtgcagaa tgactttgtg gtccttaaga aggacgtgga tgaggttttc
      661 cagagcaaga tggatttgga aggcaacctg gagtctctga gagagcacgt ctgtttcttg
      721 acacgtctgt atgaggaaga actgggacag ctgcagacac aggcaaacga tatgtccgtg
      781 gtgctgtcca tggataacag ccgttgctta gacttcagtg acatcatcgc tgaggtccgc
      841 gcccgttatg aggagatcac gcggactagc aaggccgagg ctgaggctgt gttccagacc
      901 aagtaccagg aactccagga atcagcccag cttcaaggga acagcatgaa ggaagtgcag
      961 gtgcagatct cccagctccg gcaggtcata cagaagctgc agagtcagat tgggagcctc
     1021 aggaagcaga atgacagtct gcaatcagcc attgctgatg ccgagcagca aggggagatg
     1081 gctctgaggg atgctcaggc caagctggat gagctggagg gtgctctgag agcagccaag
     1141 caggacatgg cacagatgct ccgtgactac caggaactga tgggcacaaa gttgtcccta
     1201 gatgtggaga ttgccatgta ccggagactg ctggagagcg aggagtgcag gatatccaag
     1261 gagcacacca gccaggtcac tgtctccata gaagaaggca gcattgtacc tggaagaagt
     1321 tgtggaggcc aagtggtcat ccctggaaga agttgtggag gccaagtggt catccctgga
     1381 ggagtttgta gtggccaagt agtcatacct ggaagaaatt gtggtggcca agtggttatc
     1441 cctggaagaa cttgtggagg ccaagtggtc atccctggaa gaacttgtgg aggccaagtg
     1501 accatgcctg gaagagaatg tgggggccaa gtgacagtgc ctggaagaga acatggaggc
     1561 caagtgatcg tgcctggaag agaacatggc ggtcaagtga cggtgcctgg aagagaacat
     1621 ggcggtcaag tgacggtgcc tggaagagaa catggtggtc aagtgacggt gcctggaaga
     1681 gaacatggtg gtcaagtgat ggtgcctgga agagaacatg gaggccaagt gaccattcct
     1741 ggaagagaat gtgggggcca agtgaccatt cctggaagag aatatggggg ccaagtgacg
     1801 gtgcctggaa gagaacatgg tggtcaagtg acggtgcctg gaagagaata tgggggccaa
     1861 gtgaccgtgc ctggaagaga acatggaggc caagtgacca ttcctggaag agaatgtggg
     1921 ggtcaagtga ccattcctgg aagagaatat gggggccaag tgacggtgcc tggaagagaa
     1981 tatgggggcc aagtgaccgt gtctggaaga gaatatgggg gccaagtgac cgtgcctgga
     2041 agagaatatg ggggccaagt gaccgtgcct ggaagagaat gtgggggcca agtgaccgtg
     2101 cctggaagag aatatggggg tcaagtgacc gtgcctggaa gagaatatgg gggtcaagtg
     2161 accgtgcctg gaagagaatg tgggggtcaa gtgaccgtgc ctggaagaga atatgggggt
     2221 caagtgaccg tgcctggaag agaatatggg ggtcaagtga ccgtgcctgg aagagaatat
     2281 gggggccaag tgaccgtgcc tggaagagaa tgtgggggtc aagtgaccgt gcctggaaga
     2341 gaatgtgggg gtcaagtgac ggtgcctgga agagaatatg ggggtcaagt gacggtgcct
     2401 ggaagagaat atgggggtca agtgaccatg cctggaagag aatgtggggg tcaagtgatc
     2461 gtgcctggaa gagaatgtgg gggccaagtg acgatgcctg gaagagaatg tgggggtcaa
     2521 gtgaccgtgc ctggaagaga atatgggggc caagtgacca tgcctggaag agaatgtggg
     2581 ggccaagtga ccgtgtctgg aagagaatat gggggccaag tgatgctgcc tggaagagag
     2641 tgtgggggcc aagtgaccgt gcctggaaga gaatgtgggg gccaagtgac catgcctgga
     2701 agagaatgtg ggggccaagt gaccatgcct ggaagagaac atggtggtca agtgaccgtg
     2761 cctggaagag aatgtggggg ccaagtgatg ctgcctggaa gagagtgtgg gggccaagtg
     2821 ggcacttgtg accacagagg ctggaaaggt agctttgggt ctggaggctg ctctagcatt
     2881 gtaaccggtg gctttgatgt cccccagggg tctgggtaca gccccatcat gggttcctgt
     2941 tctgtatctg gctcaggctt cagctctggc tctggctcca gctgccgcac catcctgaag
     3001 aagacaatgg aatcaagccg gaagacgtct gtcatttatt gagtgaccag gcagtcacat
     3061 cccttctgag cccagtagcc ttgctctgag cccatccccc atgtttagta cccacagccc
     3121 aaggcagctc actgggcact ggagaaagtc aataaagtca ggcctgcctg ctgttctgag
     3181 tgctcagggg caggtcctgt tctgcaca
//
