LOCUS       XM_039080392            2191 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus keratin 6A (Krt6a), mRNA.
ACCESSION   XM_039080392
VERSION     XM_039080392.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427490.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2191
                     /gene="Krt6a"
                     /note="keratin 6A; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 4 ESTs, 100
                     Proteins, and 75% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120093743"
                     /db_xref="RGD:41330462"
     CDS             1..1659
                     /gene="Krt6a"
                     /codon_start=1
                     /product="keratin, type II cytoskeletal 6A"
                     /protein_id="XP_038936320.1"
                     /db_xref="GeneID:120093743"
                     /db_xref="RGD:41330462"
                     /translation="MSTKTTIRSQTSHRGFSAGSARLPGLNRSGFSSVSVCRSRGSGG
                     SRAVCGGAGFGSRSLYGVGSSQRISVGGGSCGIGGGYGSRFGGSFGYGLGAGGSLGFG
                     AGAGFGGGYGGAGFPVCPPGGIQEVTINQSLLTPMNLQIDPTIQRVRTEEREQIKTLN
                     NKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIL
                     GERGRLDSELRNMQGTVEDYKSKYEDEINRRTAAENEFVTLKKDVDAAYMNKVELQAK
                     ADSLTDEINFLRALYEAELSQMQTHISDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIA
                     KRSRAEAESWYQTKYEELQITAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQIA
                     NLQAAIAEAEQRGEMALKDARGKLEGLEDALQKAKQDMARLLKEYQDLMNVKLALDVE
                     IATYRTLLEGEECRLNGEGVGPVNISVVQSTMSSGYGSAGGASSSIGMGGGSSFSYGG
                     SHSIGGGFSAGSGRGISSGLSSSGGSSSTIKYTTTSSTRKSYRP"
ORIGIN      
        1 atgtctacta aaaccaccat caggagccaa accagccacc gtggcttcag tgcaggctca
       61 gccagactgc ctgggctcaa ccgctctggc ttcagcagtg tgtctgtgtg ccgctccagg
      121 ggcagcggtg gctcccgtgc agtgtgtgga ggagctggct ttggcagcag gagtctctat
      181 ggtgtgggca gctcccagag gatctctgtc ggaggtggca gttgtggcat tggaggaggc
      241 tatggcagcc gattcggagg aagcttcggc tatggattag gagctggagg tagccttggc
      301 tttggtgctg gagctggctt tggtggtggc tatgggggag ccggcttccc agtttgccca
      361 cctggaggca tccaagaggt caccatcaac cagagcctcc tcacacccat gaacctgcaa
      421 atcgatccca ccatccagcg ggtcaggact gaggagaggg agcagatcaa gaccctcaac
      481 aacaagtttg cctccttcat tgacaaggtg cggttcctgg agcagcagaa caaggtcctg
      541 gacaccaagt gggccctgct gcaggagcag ggcaccaaga ccgtgaggca gaacctggag
      601 cctttgtttg agcaatacat caacaacctc cgcagacagc tggacagcat ccttggagag
      661 aggggtcgcc tggactcaga actgaggaac atgcagggca cagtggagga ctacaagagc
      721 aagtatgagg atgaaatcaa taggcgcaca gcagcagaga atgaattcgt gaccctgaag
      781 aaggatgtag atgctgccta catgaacaag gttgaactgc aagccaaggc agacagtctg
      841 acagatgaga tcaacttcct gagagctctc tatgaagcag aactgtctca gatgcaaacc
      901 cacatctcag acacatctgt ggtcctctcc atggacaaca accgcagcct ggatctggac
      961 agcatcattg ctgaggtcaa ggcccagtat gaggaaattg caaagagaag tcgggctgag
     1021 gctgagtcct ggtaccagac aaaatatgag gagctgcaga tcacagctgg cagacatggg
     1081 gacgacctgc gcaacaccaa gcaggagatc tctgagatca accgcatgat ccagaggctg
     1141 aggtctgaga tcgaccacgt gaagaagcag attgccaacc tgcaagctgc cattgccgag
     1201 gctgagcagc gtggggagat ggccctgaag gatgccaggg gcaagctgga agggctggag
     1261 gacgccctgc agaaggccaa gcaggacatg gccaggctgc tgaaggagta ccaggacctc
     1321 atgaatgtca agctggccct cgatgtggag atcgccacct acaggacgtt gctggaagga
     1381 gaggagtgca ggttgaatgg tgagggcgtt ggaccagtca acatctccgt ggtgcagtcc
     1441 accatgtcca gtggctatgg cagtgcaggt ggtgccagca gcagcatagg catgggagga
     1501 ggcagcagct tctcctatgg tggtagccac agcattggag gtggcttcag tgctggcagt
     1561 ggcagaggca tcagcagtgg actcagctcc tctggtggca gctcttccac catcaagtac
     1621 actaccacct cctccaccag gaagagctac aggccatgaa ttctgtctct aagagcttta
     1681 ccctgatccc agacatcatg gctgcagagc ctttgctcac agccctgtgc tcagggcctt
     1741 ctccttgcta gacaccaacc tctgctgtct tcttgtgctg aggaaattgt gtccttgtgc
     1801 ccatctctct gtcccaactg ctcatccctt gatagtcatg ctctgagctc acatcacgat
     1861 tcacacacac ttggtgcttc atgttgtatt tggtttccag gctcctgcct ccctacctct
     1921 aacactgagg ctgcctgtga aagggtgtct ctgtcatttt aattcttgaa atcattgtct
     1981 gggtcctatt caagaaatga gcacctcttt tttagttttc aatggcctgt gaaaccccat
     2041 ttttcaacat cataaacctt tttgtaagta actgtgactg cccagtcact ggtcctgtga
     2101 tgtagaatct gtgctcaagt gatgtctttg cttttcttag tgctctttgt ttccttatat
     2161 tcgctaaata aagcagattt ataaataata a
//
