LOCUS       NM_001008816            1359 bp    mRNA    linear   ROD 05-DEC-2024
DEFINITION  Rattus norvegicus keratin 42 (Krt42), mRNA.
ACCESSION   NM_001008816 XM_579213
VERSION     NM_001008816.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Hesse,M., Zimek,A., Weber,K. and Magin,T.M.
  TITLE     Comprehensive analysis of keratin gene clusters in humans and
            rodents
  JOURNAL   Eur J Cell Biol 83 (1), 19-26 (2004)
   PUBMED   15085952
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BK004051.1.
            
            On Apr 19, 2005 this sequence version replaced XM_579213.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BK004051.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN12840122,
                                           SAMN16418971 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..1359
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /note="keratin 42"
                     /db_xref="GeneID:450231"
                     /db_xref="RGD:1359182"
     CDS             1..1359
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /note="K42; CK-42; cytokeratin-42; type I keratin KA22"
                     /codon_start=1
                     /product="keratin, type I cytoskeletal 42"
                     /protein_id="NP_001008816.1"
                     /db_xref="GeneID:450231"
                     /db_xref="RGD:1359182"
                     /translation="MASTTSIRQFSTSGSVKGLCAPGMGFSRMSSVRIGGACRAPSLL
                     GGGSCSNMSVTSSRFSAGLGGSYGGGYTCSLGGGFGSSFGVSDALLGGSEKETMQNLN
                     DRLATYLDRVRALEEANTDLEVKIREWYKKQGPGPARDYSPYFKTIEDLRNKILAATI
                     DNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARADLEMQI
                     ETLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMAEK
                     NRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASL
                     ENSLAETEARYGAQLAQLQGLISSMEQQLCELRCDMERQNHEYQVLLDVKTRLEQEIA
                     TYRRLLEGEDAHLATQYSSSLASQASREGTVTSRQVRTIVEEVQDGKVVSSREQVHRS
                     TH"
     exon            1..462
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            463..545
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            546..702
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            703..864
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            865..990
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1211
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1261
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1359
                     /gene="Krt42"
                     /gene_synonym="Ka22"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcttcca ctaccagcat ccgccaattt tcaacctccg gctccgttaa gggcctttgc
       61 gctcctggca tggggttctc ccggatgtcc tccgtccgca ttgggggtgc ctgccgggct
      121 cccagtcttt tgggaggtgg cagctgtagc aatatgtcgg tcacctcctc ccgattctca
      181 gcgggcttag gaggcagcta cggtggtggc tacacttgca gcctgggagg gggctttggc
      241 tctagttttg gtgtgtcgga tgcccttctt gggggcagcg agaaggagac catgcagaac
      301 ctcaacgacc ggctggccac ctacttagac agggtgcgcg ccctggagga ggccaacact
      361 gacctggagg tgaagatccg tgagtggtat aagaagcagg gcccagggcc tgctcgtgat
      421 tacagcccct acttcaagac catagaggac ctgcggaaca agatcctggc agccacaatc
      481 gacaatgcca gcatcgtgct gcagatcgac aatgctcgcc tggcagccga tgacttccgc
      541 accaagtatg agacagagct gaatctgcgc atgagtgtgg aggcggacat caacggccta
      601 cgccgggtgc tggatgagct gaccctggcc agagctgacc tggagatgca gatcgagacc
      661 ctcaaggagg agttggccta cctgaagaag aaccatgagg aggagatgaa tgcccttcgt
      721 ggccaggtgg gcggggacgt caacgtggag atggatgcgg cccctggtgt ggacctgagc
      781 cgcatcctga acgagatgcg ggatcagtac gagaagatgg cagagaagaa ccgcaaggat
      841 gccgaggagt ggttcttcac caagacagag gagctgaacc gagaagtggc caccaacaca
      901 gaggccctgc agagcagccg gacggagatc acggagctcc gccgctctgt gcagaacttg
      961 gagattgagc tgcagtccca gctcagcatg aaagcatcgc tggagaacag cctggcagag
     1021 acagaggcac gttatggggc gcagctggcg cagctgcagg gcctcattag cagcatggag
     1081 cagcagctgt gtgagctgcg ttgtgacatg gaaaggcaga atcatgagta ccaggtgctg
     1141 ctggatgtga agaccaggct ggagcaggag atcgccactt accgccgcct gctggaggga
     1201 gaggatgccc acctggctac tcaatattcc tcatccctgg cttcgcaggc ctcccgagaa
     1261 ggcacggtga ccagccgcca ggtgcgcacc attgtggaag aagtccagga tggcaaggtg
     1321 gtctcctcca gggagcaggt gcaccgctcc acccactga
//
