LOCUS       NM_001415700            1630 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus keratin 28 (Krt28), transcript variant 1, mRNA.
ACCESSION   NM_001415700 XM_006247356
VERSION     NM_001415700.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Hesse,M., Zimek,A., Weber,K. and Magin,T.M.
  TITLE     Comprehensive analysis of keratin gene clusters in humans and
            rodents
  JOURNAL   Eur J Cell Biol 83 (1), 19-26 (2004)
   PUBMED   15085952
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 23, 2022 this sequence version replaced XM_006247356.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.504941.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-494               JAXUCZ010000010.1  84824364-84824857   c
            495-577             JAXUCZ010000010.1  84823865-84823947   c
            578-734             JAXUCZ010000010.1  84822900-84823056   c
            735-896             JAXUCZ010000010.1  84821091-84821252   c
            897-1022            JAXUCZ010000010.1  84820885-84821010   c
            1023-1240           JAXUCZ010000010.1  84816945-84817162   c
            1241-1296           JAXUCZ010000010.1  84815115-84815170   c
            1297-1630           JAXUCZ010000010.1  84814516-84814849   c
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..1630
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /note="keratin 28"
                     /db_xref="GeneID:360623"
                     /db_xref="RGD:1309530"
     exon            1..494
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1439
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /note="isoform 1 is encoded by transcript variant 1;
                     keratin 25D; type I keratin KA41; keratin, type I
                     cytoskeletal 28; keratin 28, type I"
                     /codon_start=1
                     /product="keratin, type I cytoskeletal 28 isoform 1"
                     /protein_id="NP_001402629.1"
                     /db_xref="GeneID:360623"
                     /db_xref="RGD:1309530"
                     /translation="MSLRFSGGSRHAGLQSGSLRPPSGGAGFAGSSAAGGSVAGSGFS
                     WALGGTLCSAPGGSHATGALGNVTCVGFAGSEGGLLSGNEKVTMQNLNNRLASYLDNV
                     KALEEANTELERKIKTWHEKYGPGSCRGLDRDYSNYHLTIEDLKSKVISSTAANANII
                     LQIDNARLAADDFRLKYENELTLHQNVEADINGLRRVLDELTLCRTDQELQYESLSEE
                     MTYLKKNHEEEMKVLQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAE
                     AWFQEKSATLQQQISNDLGAATSARTELTELKRSLQTLEIELQSLSATKHSLECTLAE
                     TEGNYCSQLAQIQAQISALEEQLHQVRTETEGQKLEHEQLLDIKAHLEKEIETYCRLI
                     GGDENSCSSSKGFESGTSGNSSKDVSKTTLVKTVVEEIDPRGKVLSSRIHSIEEKMTK
                     ISNSKAEQRVPF"
     exon            495..577
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            578..734
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            735..896
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            897..1022
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1240
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1296
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1630
                     /gene="Krt28"
                     /gene_synonym="Ka41; Krt25d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttgaaat tacaactgcc cgcggacccg tggaacgttt gcctggcacc atgtctctcc
       61 ggttttctgg cggatccagg cacgctggcc tacagtcagg atccctcagg ccgcccagcg
      121 gaggcgcagg ctttgctggg agcagtgcgg ccggcggttc agttgctggt agtggatttt
      181 cttgggcctt gggagggaca ctgtgcagtg ctcctggtgg gagccacgct actggtgccc
      241 tgggaaatgt cacttgtgtt ggcttcgctg gaagtgaagg agggctcctc tctggaaacg
      301 agaaggtcac catgcagaat ctcaacaacc gcttggcctc ttacctggat aatgtgaaag
      361 ctctggagga agcgaacact gaactagaga gaaagatcaa aacttggcat gagaaatacg
      421 gacccggatc ttgccgtggg cttgaccgtg actacagcaa ttatcatcta accattgagg
      481 accttaaaag caaggtcatc tcttccacgg ctgctaacgc taatataatt ctgcagattg
      541 ataatgccag actggctgct gacgatttca gactaaagta tgaaaacgaa ctcacccttc
      601 accaaaatgt ggaggccgac atcaatggat tgcgtcgcgt cctggacgag ctgacgctct
      661 gcaggacgga ccaagagctg cagtatgaat ccctgagtga ggagatgact tacctcaaga
      721 agaaccacga agaggaaatg aaggttctgc agtgcgcagc cggaggtaac gtgaatgtgg
      781 agatgaacgc ggccccgggc gtggacctca ccgtcctgct gaacaacatg agagccgagt
      841 acgaggccct ggctgagcag aaccgcaggg acgccgaggc ctggttccaa gagaagagcg
      901 ccacgctgca gcagcagatc tccaatgact tgggcgcagc cacctcagcc aggactgagc
      961 tgacagagct gaagcgctcc ctgcagacgc tggagatcga gctgcagtca ctctcagcaa
     1021 cgaaacactc tctagagtgc accctagcgg agaccgaggg caactactgc tcgcagctgg
     1081 ctcagatcca ggctcagatc agcgccctgg aggagcagct tcaccaggtg aggacggaga
     1141 ccgagggcca gaagctggaa catgagcagc tgctggacat caaggctcac ctggagaagg
     1201 agatcgagac ctactgccgc ctcataggcg gagacgagaa ttcctgctct agctcaaagg
     1261 gttttgaatc tggaacctcg gggaattcat ccaaagatgt atccaaaacc acactggtga
     1321 agaccgtggt tgaagaaata gatccgcgtg gtaaggtcct gtcctccagg atccactcca
     1381 tcgaggaaaa gatgaccaag ataagcaaca gcaaggctga gcagagggtt cccttctagc
     1441 tgccacgctg ggaagggggg ggtagcttgg ggacggagcc agcatggctg cacagttcta
     1501 aaactcaggg agaatggaaa cgctttcttc tattacagat aagtgacctt agacaaaata
     1561 cctgctttct tagtgactgt caaaggatgc tgggtgtttg tgtccaaata aaataactga
     1621 tggtaacaca
//
