LOCUS       NM_001108094            1691 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus KRR1, small subunit processome component homolog
            (Krr1), mRNA.
ACCESSION   NM_001108094
VERSION     NM_001108094.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1691)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128768.1.
            
            On Oct 7, 2007 this sequence version replaced NM_001108094.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128768.1, SRR8487227.75532.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..1691
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /note="KRR1, small subunit processome component homolog"
                     /db_xref="GeneID:314830"
                     /db_xref="RGD:1306183"
     exon            1..225
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     CDS             144..1286
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /note="HIV-1 Rev binding protein 2; KRR1, small subunit
                     (SSU) processome component, homolog"
                     /codon_start=1
                     /product="KRR1 small subunit processome component homolog"
                     /protein_id="NP_001101564.1"
                     /db_xref="GeneID:314830"
                     /db_xref="RGD:1306183"
                     /translation="MATSVDTPAKEARKSDSRQQKQKRENQDEGELLTVPDGWKEPAF
                     SKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCT
                     TKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRR
                     QRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNI
                     KTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ
                     VDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEA
                     STETKIDVAAIKEKVKKAKAKKLGALTAEEVKLKMEVDQKKQKRKK"
     exon            226..398
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            399..533
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            534..659
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            660..743
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            744..800
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            801..971
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1049
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1143
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1664
                     /gene="Krr1"
                     /gene_synonym="Hrb2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgttttgg cttcgtgttg gtctgagtag agaccgcgca gattttgtcc ggatcatgcg
       61 gaactcattt tgcgttagag acgctgtagc cggcgggatt aaaggacagt tccacttccg
      121 gtagcaccgg aagcaatttt aagatggcaa cttctgtaga cacgcctgcc aaagaagctc
      181 gaaaaagtga ctctcggcag cagaaacaga agcgtgagaa ccaagatgag ggagagctcc
      241 tcactgtacc tgatggttgg aaggaaccag ctttttccaa agaggacaat cccagaggac
      301 tcttggagga aagcagcttt gcaaccttgt tcccaaaata ccgagaggct tacctgaagg
      361 agtgctggcc gttggtccag aaagccctga atgaacatca tgttaaagca acgctggact
      421 tgattgaagg tagcatgact gtttgtacaa caaagaagac ttttgaccct tacatcatca
      481 ttagggcccg agacctaata aagctcttag caaggagcgt ctcttttgaa caggcaatac
      541 ggatacttca ggatgatgtc gcatgtgata tcattaaaat cggctctcta gtgagaaata
      601 aagagagatt tgtgaaaaga agacagcggc ttattggtcc caaaggatcg acattgaagg
      661 ctttggaact cctgacaaac tgttacgtta tggttcaggg gaacaccgtg tcggccatcg
      721 gacctttcag tggcctgaaa gaggttcgaa aagtagtcct tgataccatg aagaatatcc
      781 atccaattta taacattaaa accttgatga ttaaacggga gttggcaaaa gattctgagt
      841 tacgatcgca aagttgggaa agatttttgc cacagttcaa gcacaaaaat gtgaataagc
      901 gcaaggaacc gaagaagaag agtgtcaaga aggagtacac acctttccct cccccacagc
      961 ccgaaagtca ggttgacaaa gaactggcta gtggggaata ctttttgaag gcgaatcaga
     1021 agaagcggca gaaaatggaa gcaatcaagg ctaaacaagc agaagctctt acaaagaggc
     1081 aggaagaacg aaacaaagca tttattccac ctaaggaaaa gccggctgtg aagccaaagg
     1141 aagcttctac tgaaacgaag attgatgtgg ctgccatcaa ggaaaaggtt aagaaggcga
     1201 aggccaagaa gctgggcgct cttacagcag aggaagttaa gctcaagatg gaggttgacc
     1261 aaaagaagca gaagagaaaa aagtaacatt ggaaagactc ggactttcta ctgtttcctt
     1321 tcgtaaagga ttttgagatg caaagacttt agctgagtca aactcagaaa atcctgaccc
     1381 gttttcttct gctcatggac gtgcactttg taaatacata ggtggaggat gcctgtgcat
     1441 tcattgtgcc caaccagccc caggcacact ttgcccagat gttttaggaa tacctgttgt
     1501 tttaaattgt acagattttt gtaatgagac tgttattcat caatgtttgt tgccattgac
     1561 tggtctttgt aaacataccc aaaagatttg gttttgagga aaattttcac tcgattttgt
     1621 tattttactc cagaatttaa aaagaaaacc tcacaagcag aaaaaaaaaa aaaaaaaaaa
     1681 aaaaaaaaaa a
//
