LOCUS       NM_001398706            2596 bp    mRNA    linear   ROD 14-MAR-2025
DEFINITION  Rattus norvegicus KRI1 homolog (Kri1), transcript variant 2, mRNA.
ACCESSION   NM_001398706 XM_039082791
VERSION     NM_001398706.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Dec 22, 2021 this sequence version replaced XM_039082791.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1211164.1,
                                           SRR26360176.2094334.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               JAXUCZ010000008.1  28107448-28107557   c
            111-184             JAXUCZ010000008.1  28107283-28107356   c
            185-290             JAXUCZ010000008.1  28106181-28106286   c
            291-405             JAXUCZ010000008.1  28105041-28105155   c
            406-460             JAXUCZ010000008.1  28101867-28101921   c
            461-510             JAXUCZ010000008.1  28101743-28101792   c
            511-607             JAXUCZ010000008.1  28101532-28101628   c
            608-685             JAXUCZ010000008.1  28101378-28101455   c
            686-804             JAXUCZ010000008.1  28100749-28100867   c
            805-931             JAXUCZ010000008.1  28100380-28100506   c
            932-1027            JAXUCZ010000008.1  28100181-28100276   c
            1028-1198           JAXUCZ010000008.1  28099260-28099430   c
            1199-1274           JAXUCZ010000008.1  28096315-28096390   c
            1275-1363           JAXUCZ010000008.1  28096140-28096228   c
            1364-1490           JAXUCZ010000008.1  28095812-28095938   c
            1491-1621           JAXUCZ010000008.1  28095596-28095726   c
            1622-1686           JAXUCZ010000008.1  28095192-28095256   c
            1687-1785           JAXUCZ010000008.1  28095025-28095123   c
            1786-2596           JAXUCZ010000008.1  28093175-28093985   c
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..2596
                     /gene="Kri1"
                     /note="KRI1 homolog"
                     /db_xref="GeneID:687183"
                     /db_xref="RGD:1588903"
     exon            1..110
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..2113
                     /gene="Kri1"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="protein KRI1 homolog isoform 2"
                     /protein_id="NP_001385635.1"
                     /db_xref="GeneID:687183"
                     /db_xref="RGD:1588903"
                     /translation="MPEPRAPATLKVNAAFAARYSRYREREELQRLKDRYGDRDDGSD
                     SSSESDSSDEHVEFDPQQERDFYRTLSLLKKKDPRIYQKDATFYQRTAEASSSESEEE
                     SAALGKQKKVQPMYLKDYERKVILEKEGKYVDEDNSDGESVDHRLQETATKSYIEEQR
                     QLKESFRAFVEDSSDEDSAGEGGSGLLQKHTKSGEEKAQEDVDYLEWLKGQKEIDSSE
                     SLKELTHLKEYWNNPELDEGEQFLRDYILNKRYEEDEEEETEEERVLGPPVQLAVDDS
                     SDEGELFLKKQEDFEHKYNFRFEEPDSASVKTYPRSIASSVRRKDDRRKEKREETRER
                     KKREKAKKQEELKQLKNLKRKEILAKLEKLRQVTGNETLGLEEQDLEDDFDPAQHDQL
                     MQKCFGDAFYGTVEEEKPQFEEEEGLEDDWNWDTWGGPEQNGAWSQQELHCEDPDFNM
                     DADYDPSQPRKKLREAPTSGKRKRKSPFAAAVGQEKPMFDPGDKTFEEYLDEYYRLDY
                     EDIIDDLPCRFKYRTVVPCDFGLSTEEILSADDKELNRWCSLKKTCMYRSEQEEMQEQ
                     RAYSQKAQSVWKKRQIFKSLCQEEVEMPTEATGKSPSKASSQVQLPMPSAAGGKKPQA
                     ELSGAKEEELAHTPCPEKPASQKQKSKKARLLGPTVTLGGHKFSRQRLQAFGLNPKRL
                     HFRQLGRQRKKQQSHA"
     exon            111..184
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            185..290
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            291..405
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            406..460
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            461..510
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            511..607
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            608..685
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            686..804
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..931
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1027
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1198
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..1274
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1363
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1490
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1621
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1686
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1785
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
     exon            1786..2596
                     /gene="Kri1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtctcaca gccgccatgc cggaaccgcg cgctcctgcg actctaaagg tgaacgcagc
       61 ttttgctgca cgctacagcc gttaccgcga gcgtgaggaa ctacagcggc tgaaagatcg
      121 ctacggagat cgggacgacg gcagcgactc cagttccgag tctgactcca gcgatgagca
      181 tgtggaattt gatccccagc aggagagaga cttttataga actctgtcct tgttgaagaa
      241 gaaagaccct cgaatttacc agaaagatgc taccttctat cagagaacag cagaagcctc
      301 ctcttcagag agtgaggagg agtcagcagc cttgggaaag cagaagaaag tacagcccat
      361 gtacctgaag gactatgaga ggaaggtcat cttggagaaa gaaggcaaat atgtggacga
      421 ggacaactct gatggggaga gcgttgatca caggctccag gaaacagcca caaagagtta
      481 catagaagag cagagacagc tgaaggaaag cttccgtgcc tttgtggagg acagcagcga
      541 tgaggacagt gccggggaag gtggctctgg gctgctgcag aagcacacta agagtgggga
      601 agaaaaggcc caggaggatg tggactacct ggagtggcta aaggggcaaa aggagatcga
      661 cagctctgag tcgctgaaag aactgacaca cctcaaggag tactggaaca acccagaact
      721 ggacgagggg gagcagttcc tgagggatta tatcctcaac aaacgctatg aagaggacga
      781 ggaggaggag acagaggagg aaagggttct gggcccccca gtgcagctgg cggtggacga
      841 ctcctcagat gaaggggagc tattcctgaa gaagcaggaa gactttgaac acaagtacaa
      901 cttccgcttt gaggagcctg actcagcctc agtcaagaca tacccgcgga gcatcgcgtc
      961 gtctgtgcgt cgcaaggacg accgcaggaa ggagaagagg gaggagacca gggagcggaa
     1021 gaagagggag aaagccaaga agcaggagga gctgaaacag ttgaagaacc tcaagaggaa
     1081 ggagattcta gccaagctgg agaagctgcg ccaggtcact ggcaacgaga cattgggcct
     1141 tgaggagcag gacctggagg atgactttga ccctgcccag cacgaccagc tcatgcagaa
     1201 atgctttgga gatgccttct acgggactgt ggaagaagag aagccacagt ttgaggaaga
     1261 ggaggggctg gaagatgact ggaactggga cacgtggggt ggacctgagc agaatggggc
     1321 ctggagccaa caggagctgc actgtgagga ccctgacttt aacatggatg cagactatga
     1381 tcccagccaa cctcggaaga agcttcgtga agcccccacc tcaggcaaga gaaagcgcaa
     1441 gtctccgttt gcagctgcag tggggcagga gaagcccatg tttgaccctg gggacaagac
     1501 ctttgaggag tacctggatg aatactacag gctggactat gaggacatta ttgacgacct
     1561 gccttgtcgc ttcaagtacc gcactgtcgt cccctgtgac tttgggctca gcacagagga
     1621 gatcctttca gctgatgaca aggaactgaa tcgctggtgt tccctgaaga agacctgcat
     1681 gtacaggtcg gagcaggaag agatgcagga gcagcgggcg tacagccaga aggcccagag
     1741 cgtgtggaag aagaggcaga tcttcaagtc tctgtgccag gaagaggtgg aaatgcccac
     1801 agaagccaca ggaaagtcac ccagcaaggc cagctcacaa gtccagctgc ccatgcccag
     1861 tgcagctggg gggaagaagc cccaggctga gctctcagga gccaaggaag aagagttggc
     1921 ccacacaccc tgcccagaga agccagcatc ccagaagcag aagagtaaga aggccaggct
     1981 gctgggtccc acagtgacac ttggaggtca caagttcagc cgacagagat tgcaggcctt
     2041 tggcctcaac cccaaaaggc tgcacttccg ccagttgggt cgccaacgca agaaacagca
     2101 gagccacgcc tgagggccac agggagccaa cctgcctccc gggctaagct gctgaccata
     2161 ctccgcctgt tggcctaggg aagctgcctg cagcgggggc accgctgctt ctaagctggg
     2221 gaactgaggc tgccagagcc ttgtcttccc acagacaacc tgaaagtcac aaccacaggc
     2281 acactcaagt ctgcatgttt atcagcctcc actgacagtc agtcagtcct cccagtcatc
     2341 cagcgcaggc tacagaactt gaatcaggcc ctgagtgagt gccccggagc ccactccatc
     2401 cccggctcct gaggagtcag gggcagctgg gggtgaggac tcgaaagggc acaaccccaa
     2461 gctgggggcc tagataggtc tcagctgtgt tggggaggat cggggacatg aggacagggg
     2521 tccagcacca cctctggagt tccagatccc atacctgaca tgacataaat aaaaaaataa
     2581 atagtctggc atcttt
//
