LOCUS       XM_039108654            3980 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus KRAB-A domain containing 1 (Krba1),
            transcript variant X1, mRNA.
ACCESSION   XM_039108654
VERSION     XM_039108654.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3980
                     /gene="Krba1"
                     /note="KRAB-A domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 20
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362358"
                     /db_xref="RGD:1306967"
     CDS             36..3518
                     /gene="Krba1"
                     /codon_start=1
                     /product="protein KRBA1 isoform X1"
                     /protein_id="XP_038964582.1"
                     /db_xref="GeneID:362358"
                     /db_xref="RGD:1306967"
                     /translation="MRSAGPTQRSQLCGSRCSESPGPASCRAELGRCPRGSRGSRCSL
                     QLEPHRKLGGPRSREAEFRHGAPDTESRLYPQVPISFKDLAVRFSEEEWRLLQEGQRE
                     FYRDVMRENYETLVSVGTSELLPLSAFLSPAEAGGATAGENHQDKGQKPALEHSSQGE
                     QPQQSLHLTALVQLVKEIPEFLFGEVKGAEDYSESGSTSLDGEQASPEVAVAVEACPP
                     RGLISSLPESPASHPSLATTPTGSSTSSSLPGAWAQGSPLPAIETDDKPLSIEKEGVG
                     VSGETFIHSPQSLGQSKSYLRQDRGSMGTGTLPENSPLQGLINCLKEILVPRPQHRGT
                     VPDLPPSPPGLSMLKQTRAEVEAESLPCPVKTEAAPGDCPLQGLLNCLKEIPKAPDQR
                     PSPSGASDLQLQEDPGKRHSGGKGHSLGMRHLQTPPPHPSHGAGNMLTTVKVEDGWAQ
                     SPPVPASCQLGRQGYSSHSIGDNREVRVPRWGPMALASRTSSSPLEALEACLKGIPPG
                     GSSPLQSLAISWSRSPQPGDAGSQRFELQQQGSHSEEATREPLLPLSLQGYVREGPGI
                     QGCGSQGAASTSFSSASSSDGDLDFRSPRSSQGQRLGKGYAPGNSPLQGLENCLREIP
                     VPRPQAAWPCSSAVNRGLKRTEPRNWTGDREGLRGEASEPPHLRQRHGEVPSRSLHRG
                     SPQTCTPTCHQVTSRPTWQWPQEETATMPSPLHRLENSLKGILPMRPLRFTCVTGPGP
                     SPSPCSSSSFSSSDGEDLRPEPAFWQPPLQQKDHLPSCKDPVHLDPVSGASPRVNDNT
                     CSAEDPERAEPRACSNLSAGRAEEKTHPPRREDGAERTCQPGPVSSAEGKEGKGEAAG
                     HPWPAPQLEERSEPKGTEEDSRDLEPGQGQPSATARTHGKLFSGDLPEPPSKSPLPTT
                     VLSKWSPTSLQPPCPCGRSLQQELHNLGTALTDKLDQLAVTLAGLTQEVATMRTQMDQ
                     LGRRPWSLGPKGKGSWRLPLPQRPRWINRLNHRHLPYWRQKGPTRPRPKILRTQAEGC
                     KAGDHSGLPRGKGSLVPQLPPEASSVESSRPTCSSSQQISSTPGSHTVLTAHPSLEHT
                     ECYQNPLSPSVPTALVPLVASPTTSADPEPQAARGAAVSIPNQPKDPNSLLGDALSKD
                     LWGGDHRDPRWGAH"
ORIGIN      
        1 gggctgcgga cggaagcggg accacccctc ccgggatgcg aagcgcgggg ccgacccaga
       61 ggagccaact ctgcggctct cggtgcagcg agtcccccgg ccccgcttcc tgtcgtgcag
      121 aactgggccg ctgtccccga gggtctcgag ggtctcggtg cagcctccag ctagagccgc
      181 accggaagct gggtgggcca cggagtcgcg aagctgagtt ccgccatggc gctccagata
      241 cggaatcccg actgtaccca caggtgccca tcagcttcaa ggacttggcc gtgcggttct
      301 ctgaagagga gtggcggctc ctgcaggagg ggcagcggga attctaccga gacgtgatgc
      361 gggaaaacta cgagacgttg gtgtccgtgg ggacctctga gctgcttcct ctctctgctt
      421 tcctgtcacc tgcagaggct ggaggagcca cagcaggaga aaaccaccag gataaaggac
      481 aaaaacccgc tttggagcac agttcccagg gagagcagcc tcagcagagc ctgcacctca
      541 ccgcgttagt gcagctggtg aaggagattc cagagttctt gtttggagaa gtgaagggtg
      601 ctgaggacta ctccgagagt gggagcacca gtctggatgg ggagcaagca agccctgagg
      661 tagccgtggc tgtggaagct tgccctcccc gaggcctgat cagttctctt ccggagagcc
      721 ctgcaagcca ccccagcctg gccaccacac ccacaggcag ctcaacttcc agcagccttc
      781 ctggagcctg ggcacaagga agccccttac ctgctataga aactgacgat aaaccactgt
      841 ctatagagaa ggaaggtgta ggagtctcgg gagagacctt cattcattcc cctcaaagcc
      901 tgggccagag caagagttac ctaagacagg atagaggcag catgggaaca ggcactcttc
      961 ctgagaacag tccattgcaa ggcctcatca actgtctgaa ggagatcctt gtgcccaggc
     1021 cccagcaccg gggaacagtg ccagatttgc cgccttctcc ccctggcctg agtatgttga
     1081 agcagaccag agctgaggta gaagctgaga gcctgccctg cccggtgaag acagaggcag
     1141 cacccgggga ttgtcccctt cagggcttgc tgaactgtct gaaggagatc ccgaaagctc
     1201 cagaccagcg tcccagcccc tcaggagcat cagacttgca gctgcaggag gatccaggga
     1261 aaaggcattc tggaggtaaa ggccactcac tagggatgag acacctccag actcctcctc
     1321 cccaccctag tcacggagct ggcaatatgc ttaccacggt gaaggtggag gatggctggg
     1381 cccaaagtcc cccagtacca gcatcctgtc aacttggcag acagggctac agctcccact
     1441 ccattggaga caacagagaa gtccgtgtgc cccgctgggg ccccatggct ctagccagca
     1501 ggacctcaag ctcaccccta gaagctctgg aggcctgtct gaagggcatt cctccaggtg
     1561 ggtcatcacc tcttcagtca ctagccatct catggtccag aagtcctcag ccaggagacg
     1621 ctggatctca gaggtttgag ctacagcaac aaggatctca cagtgaagaa gctacaaggg
     1681 agccacttct gcctctgagc ttgcagggct atgtgagaga aggacctggg attcaaggct
     1741 gtggctctca gggtgctgcc tctaccagct tctcctcagc cagcagcagt gatggggatc
     1801 tggatttcag gagtccccgg agcagccagg ggcagaggct tgggaaaggc tatgcaccag
     1861 gaaactctcc acttcagggc ctggagaact gcctgagaga gatccctgtt cccaggccac
     1921 aggctgcctg gccttgctcc tcagctgtca atagggggtt gaagagaaca gagcccagga
     1981 actggactgg agacagagaa ggactgaggg gtgaggcctc tgagccaccc cacctcagac
     2041 agcgtcatgg agaagtaccc agcaggagtc tccatcgagg cagtccacag acctgcactc
     2101 ccacctgcca ccaagtgact tccaggccaa catggcagtg gccacaagag gagacagcca
     2161 ccatgccctc ccctctgcac cgcctggaga actctctgaa ggggatcttg cccatgaggc
     2221 ccttgcgctt cacctgcgtg actggccccg gccccagtcc cagcccatgc tccagttcca
     2281 gcttcagcag ctctgatgga gaagatctaa gaccagagcc tgccttttgg cagccacccc
     2341 tccagcagaa agaccacctt ccctcctgta aggacccagt tcatctggac cctgtctctg
     2401 gagcgtctcc aagagtcaac gacaatacct gttctgccga agaccctgag agagcagagc
     2461 ccagggcctg cagcaacctc agtgcaggaa gagcagaaga gaagacacac ccacccagaa
     2521 gagaggatgg tgcagagcgc acatgccagc ctggccctgt cagcagtgct gaaggaaaag
     2581 aaggaaaagg agaggcagct gggcacccgt ggcctgcccc tcagctggag gaaaggtctg
     2641 agcccaaggg tactgaagaa gactccaggg acctggagcc tggacaggga cagcccagtg
     2701 ccacagccag gactcatggg aagctgttct ctggggacct tccggaacca cctagcaagt
     2761 ctcccctccc cacaactgtc ttgtcaaaat ggtcacccac ttctcttcag ccaccatgcc
     2821 cctgtggcag gtccctgcag caggaactgc ataaccttgg cactgccctc acagacaagc
     2881 tagaccagct tgcagtgacc ttggcaggcc tgactcagga agttgcaacc atgaggaccc
     2941 aaatggatca gctgggaagg cgcccatgga gccttgggcc aaagggtaag ggttcctggc
     3001 ggttgcccct cccacagaga cctcgctgga tcaacagact gaaccaccga catctaccct
     3061 actggagaca gaagggcccc accaggccca gaccaaagat cctgcggacc caggcagaag
     3121 gctgcaaggc tggtgaccac tcaggactcc ctagagggaa gggtagtttg gtgcctcagc
     3181 tgcctccaga agcttcctca gtagaatctt ccaggcccac ctgtagttca tcccagcaga
     3241 tctcctctac acctggaagc cacactgtgc tgactgcaca cccctctctg gaacacactg
     3301 aatgctacca gaatcccctc tccccttcag tgcctactgc cttggtcccc cttgtggcct
     3361 cgcctacaac cagtgcagac ccagaacctc aggctgctag aggggcagca gtcagcattc
     3421 caaaccagcc caaggaccct aacagcctgc taggggatgc cctcagcaaa gacctctggg
     3481 gaggtgacca cagggatcca aggtgggggg cccattaact gggctgtttg ctcagccttg
     3541 ctggggactc tgggtggcag ggatgtcctg gtgggaccct ctggagtcca accatcccag
     3601 gctgtctgct tacctgttca accagccctc tcattgctgc tgcaagtgtg gctctgcctc
     3661 ttctatgcca agcctccatg gtgtctgcat agagccacgg aagaggcatt cctcagccat
     3721 gcctctggct ttcttggctc gggttcagtc ggttgctctt cctccttggc aaagccatgt
     3781 aggttccagg tgggtgtcgt gcataccaca tgtgcacaga gcgagctgca gagggcacca
     3841 caagggcacc ttaccctgct cctgatctca aggacactaa aaggctagcc tttgatctca
     3901 tttagggaga gcctgactga ggtctaagct gaatttaccc acatggattc taaaattaaa
     3961 tatattagtt gctaagtaaa
//
