LOCUS       NM_001399775            4997 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus lysine-rich nucleolar protein 1 (Knop1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399775
VERSION     NM_001399775.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4997)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.3347.1,
                                           SRR26643294.3912.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JAXUCZ010000001.1  182630549-182630610 c
            63-997              JAXUCZ010000001.1  182627452-182628386 c
            998-1066            JAXUCZ010000001.1  182625696-182625764 c
            1067-1144           JAXUCZ010000001.1  182623461-182623538 c
            1145-4997           JAXUCZ010000001.1  182611758-182615610 c
FEATURES             Location/Qualifiers
     source          1..4997
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..4997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="lysine-rich nucleolar protein 1"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
     exon            1..62
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            63..997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..1456
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="lysine-rich nucleolar protein 1 isoform 1"
                     /protein_id="NP_001386704.1"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
                     /translation="MVNKTQKEDLGPRLPEKKKKKKKKKKVANVSEPETQYSVLNNND
                     YFIDVSPPRATSPFNNVGEVQVPEMSLGKRKKKKKSCSTHLDEYLGKDEPTWTRQIKS
                     PSPRRQVLEQSAEGLIREKKKKRRKSLSKVASQGSGLKTSPDSKHAKEVSKAGRKPKK
                     HRKEKKLPDMEAFPPQDSWIPEAGDALHSCLEGAEAEEQAALGHKRKQGSPRDHSMKK
                     KKKKKTHQEGDILPVNSKISMENSLKKGSKKSVRSEALDFIPIDSLKAPGKKKVKSKK
                     KVEQPVGEGLAVKRKKKKRRKESGVKEDPWQEEKEESDTDLEVVLEKKGNMDEACIDQ
                     VRRKALQEEIDRESGKTEVSEPKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLS
                     PSFNRPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSWKYSRGAGLGFNSEARKVFY
                     IDRNASKSIKLQD"
     exon            998..1066
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1144
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..4997
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacttccggg tcgcggctgc gcgggtgctc acgtggggat gcttggcctg ctaatagacc
       61 agtaatggtc aacaagactc agaaagaaga cctgggccca cggctcccag agaagaagaa
      121 aaagaagaag aagaaaaaga aggtggcaaa tgtctcagaa ccagagactc agtactcagt
      181 cttaaacaat aatgattact tcatagatgt ttctcctcca agggctacat ccccttttaa
      241 caatgtgggt gaggtgcagg tccctgagat gtcactgggc aagagaaaga agaaaaaaaa
      301 gtcctgtagc acacacttgg atgagtacct gggcaaggat gagcctacat ggacaagaca
      361 gataaagtca cctagcccta gaaggcaggt ccttgagcag tcagcagaag gcctcatcag
      421 agagaagaaa aagaagaggc ggaagtcctt atcaaaggtt gcctcccaag gctcagggct
      481 gaagacttcc ccagactcca agcatgccaa ggaggtaagc aaagctggta ggaagcctaa
      541 aaagcacagg aaggagaaga agcttccgga catggaagct tttcctcccc aggactcttg
      601 gatccctgag gctggggatg ctttgcactc atgcttagag ggggcagagg ccgaagagca
      661 ggcggccttg gggcacaaaa ggaagcaggg gagccccaga gatcacagca tgaaaaagaa
      721 gaagaagaaa aagactcatc aggagggaga catcctcccg gtcaactcca agatctccat
      781 ggagaacagc ttgaagaaag ggagtaagaa gtcagtcaga agtgaagcgt tggatttcat
      841 cccgatagac agcctgaagg cccctgggaa gaagaaagtg aaatccaaaa aaaaggtgga
      901 gcagccagtt ggtgaagggc tggctgtgaa aaggaagaaa aagaagagga gaaaagagag
      961 cggagtaaag gaagacccct ggcaggagga aaaagaggag tcagacacag acttggaggt
     1021 ggtactggaa aaaaaaggca atatggatga ggcctgcata gatcaggtga gacggaaggc
     1081 cttacaagaa gagattgatc gtgagtctgg caagacagag gtttcagaac ccaaaaaatg
     1141 gacgggaacc cagtttggcc agtgggacac tgcgggcttt gaaaatgaag aacagaaact
     1201 aaaattcctg aaacttatgg gcggctttaa gcatctatcc ccgtcattca accgtcctcc
     1261 cagcatgact gtcaggtcca acatggccct ggacaagaag tcttcagata cgctccagca
     1321 gagtctgcag caggactacg accgggccat gagctggaag tacagccgag gggctggcct
     1381 gggctttaac tctgaggccc gcaaggtctt ctacattgac cggaatgcct ccaagtctat
     1441 caagttgcaa gattaaattt tattgtcctg ttcttcaagc tgcatttctt gctcagtttt
     1501 gcagttggct tgaactagtc atctgcagtt attgaggacc agtatgaatt gttaaagcct
     1561 attttctgtt aaacattcca cctccttggg tgacagtatt ttaatagtag ctagctgttg
     1621 ttgacatgtg aagggtcctg actaaaatgt tttccttgca ttgatatact taaacctaat
     1681 tatggaatgg gtgctattct cagctctatc aagttcaggg ataaagtaat aaaacggccc
     1741 agggtcacct tccgttaagt gccatgaaga gtacatcacc cagagatcag tgaagaaagc
     1801 aagtgtcatg ccatgacttc cacgggaacc agcaagtttg ttttccttct ccctcatcag
     1861 gaggcaggtg tggtgcagca ggcagctggc tgagcttccc ctctgcagcc aacacacctc
     1921 tgagctggcc tctctccagc tgccgccatc ctcccatctg actgctaagc ttggacctga
     1981 tgttgctgtg ttggctgggt ctcaaacaag gcattttgga cagcaggtga tcctgcgtgt
     2041 ggacccatga cagattctcg gcagcatgtt ctgtcttttg tgttcactag accgaagacc
     2101 tcgtatactt atgtgatgaa gtcaaatgta ggagtgaaga agatacttca tctgctgcag
     2161 gcaccatact cacccctact aaaaatcaca gcaatcttca tggagttcca gatacagaga
     2221 tccacgtggc atgattttct cttccaccag cttttggcag tctggtatca aggttcagat
     2281 aaggatattt tcctatgtct tggcctgatc tctcacgaac agaaacactg gctggggctg
     2341 ggggtgtgat ggagggagtc aggatgtttc tccttctgaa ctaccatcaa tgatggtatc
     2401 ctcacactgc taggaagatg agaggcaatt ccaggcattc cagagatagg agaaaactct
     2461 taaccaaaga aacttctggc agtccttcag gaagcctttt atggcttcat tcaactctgt
     2521 agttgttctg tatcagcctc cggggtaagg agatgcccct caggccagcc aaggagaggg
     2581 tgaggtgtgc agtactgcca aatgggcagc agaggtgatg ctgtgcctgc ggaaactgcc
     2641 tccacaccac cctgttccct gacctgtaga cgtgggccat attgcaaaga cctgtttaag
     2701 ccactttcct gggatgaact tggtccttcg taaattcttc ctcaagattc agaaaagaag
     2761 accacctcta gtctcaggtg gcagaattct gcatttgagt caatgtctag acaaatctcc
     2821 cctggccttg gtgaaccctg ggaaccagct gggtaactcc aacagttcgt gttccccaga
     2881 ggtcacactc cagtctgagc atacctttgc tcatcagaaa gttgcacatg gccatgtgat
     2941 agatggtttc ccatcttatg ccacatacac cttggaaact tatcaaagtg tgagagccag
     3001 atctttttct tagtgttaca cagatttcag tgctaaagga cttgattttg tagcttggta
     3061 cctcagcata gacttaggtg ttccatttac tcacccttct ctctaagtaa gaattgaagt
     3121 ttgtaagcaa agacagccat agggtcccct caagagtgag ttcagccttg tctcttgaga
     3181 gaagcactta atgcccgtgc ttctgttaac caggctccag tcctacccct ttttccatgt
     3241 cttgtacctt ccccagaacc ctgcaaactt ctgcctggtg tagtcctctc caaggtactg
     3301 atcacctgat cagtgatcca acacagcctt gaacttggct gttctctcag gcatttctta
     3361 ccagcttggt gacactccgt agcaatatcc ttctccaaca gtcaaatctc atggttcctt
     3421 ccactttgtt cttgagctga tttctgtgct gtatccactg ggcccctgag gctaccttgt
     3481 acaatcatac taacctgtca gaagtctctc ctaatgagaa gcagttgtcc cctgctctta
     3541 gtactacttg gatcatggca ggcaggacac atggacacac tcagcagaag gggaattaaa
     3601 aatcactgac cacatgattt ttattattat tttttttttt tttttttttt ttactttttt
     3661 ggtttttcaa gacagggttt ctttgtgtac ccctgaagac catgctagcc ttaaaactca
     3721 gatccaccca tctctgcctc cggagtgctg ggattaaagt tgtgcatcac cactgcatgg
     3781 cttcaagcca ccactgacta tcagatgaat ttgaaataag atccttgatt acctgagtag
     3841 gttcttcata aaattcctta actggtaggt agcagaagag ttagtgtaga agaggcttgg
     3901 aagacaccac agtcactggg gaaggaaaag gccacaagcc aagaacacag gcagccttca
     3961 gaagccatgc agcatttctt tccaccaagt gcccacaaaa gaacttcgtc atggcaacac
     4021 cttgacctag cccagagaag ccagtgagtt ctgaccaaca gctgtcagta agaccacagg
     4081 aagtcactgc ttgaaatttg ttacagcaac aaggaccagg aatgactgac agacaagcat
     4141 cctgtttttc acttcctgaa agtctcttca cacatccttc ccaacaccaa caggtgctgt
     4201 ttgtggaggt ggattccgag actggcctgt cagtaacact tctggtcagc agattatttc
     4261 aggagccctg tgctgtgtgt gcctaatgtg agctaagccg aggttaacac agaagcactg
     4321 ggaattctct aggtcaatgt aaagcactaa tgctattcaa cgtgggcagc tttgaggcaa
     4381 gagaataact tacaaagaat tatttgtgaa tttgccagtt atttttctaa gaattaacac
     4441 cataatgaaa gtgacataag ataattatag tggaaagttt tgtgaaataa aggccacttg
     4501 ggagtatctg aacagcagca tagtgcattc tgggttctgg catgtttgtt cacagcagag
     4561 gaaaggcatt ctttaatacc tggtttttgt ttttgagact agggctcata tatcccagat
     4621 tagcttcaaa catgtaactg gggaccttga acagatccaa tcctgtctct acctcctaac
     4681 tactgggatt atgggtctgt gtcatggcac tgttttatat ggggccttgt gtctgccagg
     4741 caagcattcc actaactgag ccatatcctt agcctcagct attcagtttt ggttttgttt
     4801 ttaagaaatt ttattcagtt ccttgggctg gagggtactg tcttcagatt ggtcccaaat
     4861 gtatgtacag caataacctt ggtcttaaac taataaagac atgtacacat aaatatatat
     4921 gactttaact tctttctgag gttagtcatg tattgtgttt cagaatgaag ataaataaaa
     4981 tcgataccta aagcaca
//
