LOCUS       XM_039111919            4937 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus kelch-like family member 29 (Klhl29),
            transcript variant X1, mRNA.
ACCESSION   XM_039111919
VERSION     XM_039111919.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111919.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4937
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4937
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /note="kelch-like family member 29; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:298867"
                     /db_xref="RGD:1311076"
     CDS             54..2909
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /codon_start=1
                     /product="kelch-like protein 29 isoform X1"
                     /protein_id="XP_038967847.1"
                     /db_xref="GeneID:298867"
                     /db_xref="RGD:1311076"
                     /translation="MESVHAHHHHCLDGEREEGPRVDPRTVWLPHYAHALLSAGGRRS
                     FCILGTNPELTRDGRRKVRALVPCEKLPRPTEMSRHHSRFERDYRVGWDRREWSVNGT
                     HGATSVCSVTSGAGGGTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGNSEAITSL
                     VASSASAVTTKAPGISKADNQSQGLTTSIRWGQTPVNQSTPWDTDEPPSKQMREGDNP
                     GTGPWVTTVAAGNQPSLIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLM
                     PGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMA
                     GPLLPPPPPAQPSAALPSSVPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEML
                     KELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQGSREKLE
                     LVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLT
                     ASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLN
                     TKAEELVYETVIKWIKKDPATRAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEA
                     CRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVT
                     CWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWN
                     LVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHS
                     AAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFV
                     FILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALG
                     NMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG"
ORIGIN      
        1 gttttcatga aaggtaggtg gcgaaagtca tgccctgaaa taagaatcta ggaatggagt
       61 cagtccatgc acatcatcat cactgtcttg atggagagag agaggaggga ccaagagttg
      121 acccaaggac tgtctggctt ccccactatg cccatgcttt gctaagtgct ggtggccgtc
      181 gaagtttttg catcctgggg acgaatcctg agcttaccag agacggacgg cgcaaggtcc
      241 gggctctggt tccctgtgag aagctgccac ggcccaccga gatgtccagg caccatagcc
      301 gcttcgaaag agattaccgc gtgggctggg accgccgtga gtggagtgtc aatgggaccc
      361 atggggccac cagcgtctgc agcgtcacct ccggtgccgg tggaggcaca gccagcagtc
      421 tcagcgcacg gccgggcctc ctgccgctgc ccgtggtacc ctcccggctg cccacacccg
      481 ccacagcgcc tgctccctgc acgaccggca acagtgaagc tatcaccagt cttgtggcca
      541 gctcggcctc cgctgtcacc accaaggctc ctggcatctc caaagcggac aatcagtccc
      601 agggactcac gaccagcatc cgatggggtc agacgcctgt caatcagtcc acaccctggg
      661 acactgatga gccgccctcc aaacagatga gggagggtga caatccaggc actgggccat
      721 gggtgaccac ggtggccgcc gggaaccagc cttccctgat cgcacactcc tatggagtgg
      781 cccagcctcc caccttcagt ccggctgtga acgtccaggc cccggtcatc ggggtgactc
      841 cctcactgcc tccccatgtg ggaccccagc tcccgctgat gccaggccac tactcactcc
      901 cacagccgcc ctcccaacca ctgagcagtg tggtggtgaa catgccggct caggccctgt
      961 atgccagccc tcagcccctg gcggtatcca ctttgcctgg agtggggcag gtagcccgcc
     1021 caggacccac tgctgtgggc aacggccaca tggcagggcc cctgctgcct ccacctccac
     1081 cagcccagcc atctgccgct ctccccagta gtgttcctgc caccaatggg ccccccacaa
     1141 cagactcagc ccatgggcta caaatgcttc ggaccattgg agtggggaag tatgagttca
     1201 ccgacccagg gcaccctaaa gaaatgttga aggagttgaa ccagcaacgc agagcgaaag
     1261 cgtttacaga cctgaaaatt gttgttgaag gcagagagtt tgaagtccac caaaatgttc
     1321 tagcttcctg cagcttgtat ttcaaggacc tgattcaaag gtcggtgcag gacggcagcc
     1381 agggcagccg ggagaagctg gagctggtgc tctccaacct gcaggctgac gtactggaac
     1441 tgctgctaga gttcgtctac acggggtcgc tggtcatcga ctcagccaat gccaagactc
     1501 tgcttgaggc ggccagcaag ttccagtttc acaccttctg caaagtctgt gtgtcctttc
     1561 ttgagaagca gctgactgcc agcaactgtc tgggggtact ggccatggct gaggccatgc
     1621 agtgcagtga gctctaccac atggccaagg ccttcgcact gcagatcttc cccgaggtgg
     1681 cggctcagga ggagatcctc agcatctcta aggatgactt tatcgcctac gtctccaatg
     1741 acagcctcaa caccaaggcc gaggagctag tctacgaaac tgtcatcaag tggatcaaga
     1801 aggacccggc aacacgcgca cagtatgcag cggagctcct ggctgctgtc cgcctcccgt
     1861 tcatccaccc cagctatctg ctcaatgtgg tggacaacga agagctgatc aagtcatcgg
     1921 aagcttgtcg ggacctggtc aatgaggcta aacgttacca catgctaccc catgcccggc
     1981 aggagatgca gacaccgaga acccggcccc gcctctctgc aggtgtggcc gaggtcatcg
     2041 ttttggttgg gggccgtcaa atggttggga tgacccagcg ctcactggtg gctgtcacct
     2101 gctggaaccc acagaacaac aagtggtacc ccttggcctc gctgcctttc tatgaccgcg
     2161 agttcttcag tgtagtgagt gctggggaca acatctacct ctcaggtggt atggagtcag
     2221 gggtgacact ggctgatgtc tggtgctaca tgtccctgtt ggataactgg aacctggtct
     2281 ccagaatgac tgtccctcgc tgtcgccaca atagtcttgt ctatgatggg aagatttaca
     2341 ctcttggggg acttggagtg gcaggcaacg tggaccacgt agagaggtac gacactatca
     2401 ctaaccaatg ggaggcagta gcccctctgc ctaaggcggt acactcagca gcggccactg
     2461 tgtgtggcgg taagatctac gtgtttggtg gggtgaatga ggcgggccga gcggcgggtg
     2521 tcctccagtc ctatgtgcca cagaccaaca cgtggagctt catcgagtcc ccaatgatag
     2581 acaacaagta tgcaccggct gtcaccctca atggctttgt gttcatcctg ggaggagctt
     2641 atgccagagc caccaccatc tacgacccag aaaaaggcaa catcaaggcg gggccgaaca
     2701 tgaatcactc tcggcagttc tgcagtgctg tggtgcttga tggtaaaatt tatgcaactg
     2761 gaggcatcgt gagcagtgag ggaccagccc tgggcaacat ggaagcctac gagcccacaa
     2821 ccaacacatg gaccctccta ccccacatgc cctgtcctgt gttcagacac ggctgtgtcg
     2881 tgataaagaa gtatattcaa agcggctgac atcggtggga agcccaagac gagtctatgg
     2941 gacaagtccg gtgaggtgac taccacacgc cgtggttacc tttcgacacc aacaagaggc
     3001 ccacaaaaca caatcaagaa actcactgcg ctaacatttc gaatattctc tacattgaat
     3061 gtaggaaaat catcctcgcc ttttgggtga agcggggcac agtgctccgg gcagccggaa
     3121 cctggaacgc acggagccca ggctcgctgg ccagctgagg cacttgctct gaacagaggg
     3181 cgctcactct gcccggtgca atagtttcac atatttttca actgggagag aagctgtttt
     3241 tttccttctt gcagagcaag cttgatccct aaaccaccat agatcagttt atcctgtgac
     3301 aatttggggc atcacgctct tttggaataa ggtcaaagtg tccttatcac tttgattcct
     3361 acttttgggt tttttttttt aattttattt ttcagttttt ttttcttttt aaacctatct
     3421 acactttcaa gtggccgaga gaaaaaagag ggaagggact gcgcagcacc aaggcctagg
     3481 agaggggctc gttgccacca gacgggatag agggccagct gcacgtgcag agccagggct
     3541 cgcagccgca gtggtcgctt gggaagagcc gcctgtcctt catgggtttt tctaccatgg
     3601 ttttgctgca aaaggacatg gcgggtacac tagctttctc ttaaccagta tgaattattt
     3661 agatttccaa ggcattttct tgatacacaa aaggctattt ttaagtaccg agagaaggag
     3721 gccacaagag ggagaacgct gtgggacttc ccaaagctct ttgtaggtag cgccagaggt
     3781 agggcactgg ctctcatttt tctatgtgca gaatagagga tctctcctga ggtgggccat
     3841 gccccccact ttatttttgg aaaaagttaa ctcccagaca gtcccggaag accatgcctt
     3901 gcaggggcat tgtcagaagg aagggtctat tctggaagaa catggttctg gctcctgaca
     3961 ccagtccagc tccctctgtg aggtaaagct gaggacccag gccccaggaa agggactgag
     4021 ggagggaggg agggagaaga aatgtctaca aagcacagga gactattttt gatatttata
     4081 gctatatatt gaaggcacct gccacgagag ctctcaggat ggggacagcc ttcttagacg
     4141 agccatgaca gccacggcct gagggggcac aagcagaaac actcttcttg ttgcctcgtt
     4201 gcatagtaac ctgagaaaag ggaagccagg agaggtccca acgaggctca aaagagaaag
     4261 gccttcccat taagtcctta gaccctcaaa cctcacccgg taatcagtct ccattccagg
     4321 gcaggaagaa ggccgccgcc accgcgctgt ttagttgaag ttagtaacca aatacacacc
     4381 atttttctac ctggaaagtc gacttgccat cacttcatga taagaaccat tgacagagag
     4441 aaagagacac tacgcgcttt ccatcactca gtattggacg acacaaaatt ccagtcctaa
     4501 cgacgggcat caacttctag catcacaagt gtggctccca cttgacaaga taccgagctt
     4561 cgttatgcag tttttaatat tatttattat ttaaaaaaag taataagcac aaaactacat
     4621 acattgtatg tcatttaaag tatttatgtc aaacagggtg caagtgtgaa cccaaggact
     4681 ggagcacaaa tttctaactg cctggggcag ggcgaatatg agcattggcg tgcatctgcc
     4741 tccaagggag gtgttagtgg tcaacaagac tccgcagatg atgctgaaat tccgtttctc
     4801 tcctcatcta tcacactgga gcaaaactgg ctatttctgt gaatgatata aaacagggtt
     4861 ctctgtaatg gtattgtaca tagtatatgt ttattgttaa gttgttatat tataataaat
     4921 atatttatag atctaga
//
