LOCUS       NM_001106713            6983 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus kelch-like family member 29 (Klhl29), mRNA.
ACCESSION   NM_001106713 XM_001071030 XM_233955
VERSION     NM_001106713.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6983)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001106713.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR21887623.843538.1,
                                           SRR21887623.843534.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-574               JAXUCZ010000006.1  34109482-34110055   c
            575-682             JAXUCZ010000006.1  34027308-34027415   c
            683-1012            JAXUCZ010000006.1  33943029-33943358   c
            1013-1154           JAXUCZ010000006.1  33868801-33868942   c
            1155-1667           JAXUCZ010000006.1  33865657-33866169   c
            1668-1806           JAXUCZ010000006.1  33831185-33831323   c
            1807-2009           JAXUCZ010000006.1  33823400-33823602   c
            2010-2269           JAXUCZ010000006.1  33822052-33822311   c
            2270-2468           JAXUCZ010000006.1  33819743-33819941   c
            2469-2651           JAXUCZ010000006.1  33819417-33819599   c
            2652-2832           JAXUCZ010000006.1  33819032-33819212   c
            2833-3026           JAXUCZ010000006.1  33812530-33812723   c
            3027-3171           JAXUCZ010000006.1  33812212-33812356   c
            3172-6983           JAXUCZ010000006.1  33805922-33809733   c
FEATURES             Location/Qualifiers
     source          1..6983
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..6983
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /note="kelch-like family member 29"
                     /db_xref="GeneID:298867"
                     /db_xref="RGD:1311076"
     exon            1..574
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            575..682
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            683..1012
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     CDS             728..3355
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /note="kelch repeat and BTB (POZ) domain containing 9;
                     kelch-like 29"
                     /codon_start=1
                     /product="kelch-like protein 29"
                     /protein_id="NP_001100183.1"
                     /db_xref="GeneID:298867"
                     /db_xref="RGD:1311076"
                     /translation="MSRHHSRFERDYRVGWDRREWSVNGTHGATSVCSVTSGAGGGTA
                     SSLSARPGLLPLPVVPSRLPTPATAPAPCTTGNSEAITSLVASSASAVTTKAPGISKA
                     DNQSQGLTTSIRWGQTPVNQSTPWDTDEPPSKQMREGDNPGTGPWVTTVAAGNQPSLI
                     AHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVV
                     VNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLLPPPPPAQPSAALPS
                     SVPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIV
                     VEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQGSREKLELVLSNLQADVLELLLEFV
                     YTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSE
                     LYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKD
                     PATRAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHAR
                     QEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFY
                     DREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYD
                     GKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNE
                     AGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEK
                     GNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHM
                     PCPVFRHGCVVIKKYIQSG"
     exon            1013..1154
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1667
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1806
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            1807..2009
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            2010..2269
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            2270..2468
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            2469..2651
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            2652..2832
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            2833..3026
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            3027..3171
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
     exon            3172..6983
                     /gene="Klhl29"
                     /gene_synonym="Kbtbd9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtccccgcg ccgcggccgc gccaaccccc gcgccgccgc cgccgtcgcc gctgtccctg
       61 ccaccgccgc tctagccgca gctccaaccc cggcgccggc tactcagcgc acgtccgcag
      121 ccccggccat cgccgagcct gagctcagcc cccgcccgga gcccgagccc ggagcccgga
      181 gccagcccca gccccgcggc cgccgcggct gcggggagag ggcgggggcg atgctgccgg
      241 agccgccgcc gctgccgccg cctcgatgag agccgcgccg caccgcgcat agtcgcgcag
      301 gctgacaggc agaaggactg acttccctct cccgggcatc ctccctgggc tgccgggagg
      361 cggcggcggc gggggaggag gagggaaagg gggagaaggc ggagagcagg aacgcgagga
      421 ggtggacctg gatccctttc tcccggccag gacgcgagcg gccccagcta ccgctacccg
      481 ccggcgccgt cccctatcca tcaaccctcc tgcacccatc cgcgaccctg ggctctctgc
      541 gcgtcgggcc ggggccggag cggcgcggcc gcagactgtc tggcttcccc actatgccca
      601 tgctttgcta agtgctggtg gccgtcgaag tttttgcatc ctggggacga atcctgagct
      661 taccagagac ggacggcgca aggtccgggc tctggttccc tgtgagaagc tgccacggcc
      721 caccgagatg tccaggcacc atagccgctt cgaaagagat taccgcgtgg gctgggaccg
      781 ccgtgagtgg agtgtcaatg ggacccatgg ggccaccagc gtctgcagcg tcacctccgg
      841 tgccggtgga ggcacagcca gcagtctcag cgcacggccg ggcctcctgc cgctgcccgt
      901 ggtaccctcc cggctgccca cacccgccac agcgcctgct ccctgcacga ccggcaacag
      961 tgaagctatc accagtcttg tggccagctc ggcctccgct gtcaccacca aggctcctgg
     1021 catctccaaa gcggacaatc agtcccaggg actcacgacc agcatccgat ggggtcagac
     1081 gcctgtcaat cagtccacac cctgggacac tgatgagccg ccctccaaac agatgaggga
     1141 gggtgacaat ccaggcactg ggccatgggt gaccacggtg gccgccggga accagccttc
     1201 cctgatcgca cactcctatg gagtggccca gcctcccacc ttcagtccgg ctgtgaacgt
     1261 ccaggccccg gtcatcgggg tgactccctc actgcctccc catgtgggac cccagctccc
     1321 gctgatgcca ggccactact cactcccaca gccgccctcc caaccactga gcagtgtggt
     1381 ggtgaacatg ccggctcagg ccctgtatgc cagccctcag cccctggcgg tatccacttt
     1441 gcctggagtg gggcaggtag cccgcccagg acccactgct gtgggcaacg gccacatggc
     1501 agggcccctg ctgcctccac ctccaccagc ccagccatct gccgctctcc ccagtagtgt
     1561 tcctgccacc aatgggcccc ccacaacaga ctcagcccat gggctacaaa tgcttcggac
     1621 cattggagtg gggaagtatg agttcaccga cccagggcac cctaaagaaa tgttgaagga
     1681 gttgaaccag caacgcagag cgaaagcgtt tacagacctg aaaattgttg ttgaaggcag
     1741 agagtttgaa gtccaccaaa atgttctagc ttcctgcagc ttgtatttca aggacctgat
     1801 tcaaaggtcg gtgcaggacg gcagccaggg cagccgggag aagctggagc tggtgctctc
     1861 caacctgcag gctgacgtac tggaactgct gctagagttc gtctacacgg ggtcgctggt
     1921 catcgactca gccaatgcca agactctgct tgaggcggcc agcaagttcc agtttcacac
     1981 cttctgcaaa gtctgtgtgt cctttcttga gaagcagctg actgccagca actgtctggg
     2041 ggtactggcc atggctgagg ccatgcagtg cagtgagctc taccacatgg ccaaggcctt
     2101 cgcactgcag atcttccccg aggtggcggc tcaggaggag atcctcagca tctctaagga
     2161 tgactttatc gcctacgtct ccaatgacag cctcaacacc aaggccgagg agctagtcta
     2221 cgaaactgtc atcaagtgga tcaagaagga cccggcaaca cgcgcacagt atgcagcgga
     2281 gctcctggct gctgtccgcc tcccgttcat ccaccccagc tatctgctca atgtggtgga
     2341 caacgaagag ctgatcaagt catcggaagc ttgtcgggac ctggtcaatg aggctaaacg
     2401 ttaccacatg ctaccccatg cccggcagga gatgcagaca ccgagaaccc ggccccgcct
     2461 ctctgcaggt gtggccgagg tcatcgtttt ggttgggggc cgtcaaatgg ttgggatgac
     2521 ccagcgctca ctggtggctg tcacctgctg gaacccacag aacaacaagt ggtacccctt
     2581 ggcctcgctg cctttctatg accgcgagtt cttcagtgta gtgagtgctg gggacaacat
     2641 ctacctctca ggtggtatgg agtcaggggt gacactggct gatgtctggt gctacatgtc
     2701 cctgttggat aactggaacc tggtctccag aatgactgtc cctcgctgtc gccacaatag
     2761 tcttgtctat gatgggaaga tttacactct tgggggactt ggagtggcag gcaacgtgga
     2821 ccacgtagag aggtacgaca ctatcactaa ccaatgggag gcagtagccc ctctgcctaa
     2881 ggcggtacac tcagcagcgg ccactgtgtg tggcggtaag atctacgtgt ttggtggggt
     2941 gaatgaggcg ggccgagcgg cgggtgtcct ccagtcctat gtgccacaga ccaacacgtg
     3001 gagcttcatc gagtccccaa tgatagacaa caagtatgca ccggctgtca ccctcaatgg
     3061 ctttgtgttc atcctgggag gagcttatgc cagagccacc accatctacg acccagaaaa
     3121 aggcaacatc aaggcggggc cgaacatgaa tcactctcgg cagttctgca gtgctgtggt
     3181 gcttgatggt aaaatttatg caactggagg catcgtgagc agtgagggac cagccctggg
     3241 caacatggaa gcctacgagc ccacaaccaa cacatggacc ctcctacccc acatgccctg
     3301 tcctgtgttc agacacggct gtgtcgtgat aaagaagtat attcaaagcg gctgacatcg
     3361 gtgggaagcc caagacgagt ctatgggaca agtccggtga ggtgactacc acacgccgtg
     3421 gttacctttc gacaccaaca agaggcccac aaaacacaat caagaaactc actgcgctaa
     3481 catttcgaat attctctaca ttgaatgtag gaaaatcatc ctcgcctttt gggtgaagcg
     3541 gggcacagtg ctccgggcag ccggaacctg gaacgcacgg agcccaggct cgctggccag
     3601 ctgaggcact tgctctgaac agagggcgct cactctgccc ggtgcaatag tttcacatat
     3661 ttttcaactg ggagagaagc tgtttttttc cttcttgcag agcaagcttg atccctaaac
     3721 caccatagat cagtttatcc tgtgacaatt tggggcatca cgctcttttg gaataaggtc
     3781 aaagtgtcct tatcactttg attcctactt ttgggttttt ttttttaatt ttatttttca
     3841 gttttttttt ctttttaaac ctatctacac tttcaagtgg ccgagagaaa aaagagggaa
     3901 gggactgcgc agcaccaagg cctaggagag gggctcgttg ccaccagacg ggatagaggg
     3961 ccagctgcac gtgcagagcc agggctcgca gccgcagtgg tcgcttggga agagccgcct
     4021 gtccttcatg ggtttttcta ccatggtttt gctgcaaaag gacatggcgg gtacactagc
     4081 tttctcttaa ccagtatgaa ttatttagat ttccaaggca ttttcttgat acacaaaagg
     4141 ctatttttaa gtaccgagag aaggaggcca caagagggag aacgctgtgg gacttcccaa
     4201 agctctttgt aggtagcgcc agaggtaggg cactggctct catttttcta tgtgcagaat
     4261 agaggatctc tcctgaggtg ggccatgccc cccactttat ttttggaaaa agttaactcc
     4321 cagacagtcc cggaagacca tgccttgcag gggcattgtc agaaggaagg gtctattctg
     4381 gaagaacatg gttctggctc ctgacaccag tccagctccc tctgtgaggt aaagctgagg
     4441 acccaggccc caggaaaggg actgagggag ggagggaggg agaagaaatg tctacaaagc
     4501 acaggagact atttttgata tttatagcta tatattgaag gcacctgcca cgagagctct
     4561 caggatgggg acagccttct tagacgagcc atgacagcca cggcctgagg gggcacaagc
     4621 agaaacactc ttcttgttgc ctcgttgcat agtaacctga gaaaagggaa gccaggagag
     4681 gtcccaacga ggctcaaaag agaaaggcct tcccattaag tccttagacc ctcaaacctc
     4741 acccggtaat cagtctccat tccagggcag gaagaaggcc gccgccaccg cgctgtttag
     4801 ttgaagttag taaccaaata cacaccattt ttctacctgg aaagtcgact tgccatcact
     4861 tcatgataag aaccattgac agagagaaag agacactacg cgctttccat cactcagtat
     4921 tggacgacac aaaattccag tcctaacgac gggcatcaac ttctagcatc acaagtgtgg
     4981 ctcccacttg acaagatacc gagcttcgtt atgcagtttt taatattatt tattatttaa
     5041 aaaaagtaat aagcacaaaa ctacatacat tgtatgtcat ttaaagtatt tatgtcaaac
     5101 agggtgcaag tgtgaaccca aggactggag cacaaatttc taactgcctg gggcagggcg
     5161 aatatgagca ttggcgtgca tctgcctcca agggaggtgt tagtggtcaa caagactccg
     5221 cagatgatgc tgaaattccg tttctctcct catctatcac actggagcaa aactggctat
     5281 ttctgtgaat gatataaaac agggttctct gtaatggtat tgtacatagt atatgtttat
     5341 tgttaagttg ttatattata ataaatatat ttatagatct agactcagaa gccaacacaa
     5401 tgtctttgtg tgccatcacc attgcctcaa cgacgccaca ctcctgctct tcctcttggt
     5461 catcagagtg tgtgtcctct tacaggtggc ccgtgtaggt tctgatgatg agagagaagg
     5521 ggaaagggac agatgaacag tgacctccag tgaggaacag ctggatgtca aaagctgact
     5581 tagagactct gagataccat ggaattgacc cagactgtcc ccttagctcc tgaacttgtc
     5641 ttaccacggc catgcatctg aaagatccag agctcgcttt tacccccttc gcttctgccc
     5701 aggggtgggg cccttttttt attttctcaa gacacttcct ccaggaagaa aatcaagtgt
     5761 gatttccatg ctaagaacca ggcagggtgg cctccttgct tcctcagttg cagggttctc
     5821 tcgtccatcg tccatcacac agaccacttt gccatgccca ggcaaggcta cttacttcgc
     5881 atgcaatatg gaaatgcctc tgtcaggaag gaaatttggg aagagagggt agattttcca
     5941 gcatagtcat ccacatgaag cccccatgtc cttaatccct aaatcttacc aagacctagt
     6001 gtctccttgg aaacaaaagc ttagtaaagg gaacaggaag tgagaggagg ggctctccta
     6061 ataacttggc tgaaaccttg ggatgagtag accatactcc tgacaaatca ctagttccct
     6121 aggaccatcc atcctgcaag gaaggacaga gactgtctag aagaagccaa ccatgaagag
     6181 aaaggtgaca taacctgtga ttaaaagcag tctgttagct ccattcttaa ctatttcatt
     6241 tgtttaaatg aaggaacatg ttcttgtggt ccatgaaggg tctctgtgtt ttatacctaa
     6301 ctctgtgtgg tgaacagatt ccataaaaag acagatgagt tcacaggatt gggagacccg
     6361 ccacaagaac tttcgaggca caactgcctg atctaacaaa gaggatgaga agacggtgca
     6421 cattgtgttt taagaacttc aaaataagag ggcaatccac agaagtgtct attgcctgtg
     6481 tgataaaccg taaaacagta tcttcactag agaaactagg taatgcaact gggaaatgtt
     6541 agttgggtgt tagacctaag agagaaataa atacaaggtg ctggcaagcg gaatccacaa
     6601 gtaaaaatgg aaattcaaca ccagaagttg acaatgaatg aggtcatacc ttgtagccac
     6661 tgagtaagtt agatccctag accataaggg gaagctgtgc tgagaaggag cgtgagattc
     6721 tgacgtagtc ctaagggctc tgcagaggga cagctggcaa ggcatcgggc accccgtatc
     6781 atgagctgga ggagcactga gaaatcactt ctagacagcc ataaagaaat gacatgaact
     6841 ctgggaaaag aacaccaact attctgtcac aatggcgtgg gagcatgagt ggcacttact
     6901 tgtcaacact aaggatgcgc tgagcaccat gctaagctct caaagccctg gatcctcaag
     6961 attcaggtat aaaagacaca cac
//
