LOCUS       NM_181479               1310 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus killer cell immunoglobulin like receptor, three
            Ig domains and long cytoplasmic tail 1 (Kir3dl1), mRNA.
ACCESSION   NM_181479
VERSION     NM_181479.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Sorgho,P.A., Djigma,F.W., Martinson,J.J., Yonli,A.T., Nagalo,B.M.,
            Compaore,T.R., Diarra,B., Sombie,H.K., Simpore,A., Zongo,A.W.,
            Ouattara,A.K., Soubeiga,S.T.R., Traore,L., Yelemkoure,E.T.,
            Kiendrebeogo,I.T., Roberts,L.R. and Simpore,J.
  TITLE     Role of Killer cell immunoglobulin-like receptors (KIR) genes in
            stages of HIV-1 infection among patients from Burkina Faso
  JOURNAL   Biomol Concepts 10 (1), 226-236 (2019)
   PUBMED   31863692
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Martin,M.P., Naranbhai,V., Shea,P.R., Qi,Y., Ramsuran,V., Vince,N.,
            Gao,X., Thomas,R., Brumme,Z.L., Carlson,J.M., Wolinsky,S.M.,
            Goedert,J.J., Walker,B.D., Segal,F.P., Deeks,S.G., Haas,D.W.,
            Migueles,S.A., Connors,M., Michael,N., Fellay,J., Gostick,E.,
            Llewellyn-Lacey,S., Price,D.A., Lafont,B.A., Pymm,P.,
            Saunders,P.M., Widjaja,J., Wong,S.C., Vivian,J.P., Rossjohn,J.,
            Brooks,A.G. and Carrington,M.
  TITLE     Killer cell immunoglobulin-like receptor 3DL1 variation modifies
            HLA-B*57 protection against HIV-1
  JOURNAL   J Clin Invest 128 (5), 1903-1912 (2018)
   PUBMED   29461980
REFERENCE   3  (bases 1 to 1310)
  AUTHORS   Ruiz-Extremera,A., Pavon-Castillero,E.J., Florido,M., Munoz de
            Rueda,P., Munoz-Gamez,J.A., Casado,J., Carazo,A., Quiles,R.,
            Jimenez-Ruiz,S.M., Gila,A., Luna,J.D., Leon,J. and Salmeron,J.
  TITLE     Influence of HLA class I, HLA class II and KIRs on vertical
            transmission and chronicity of hepatitis C virus in children
  JOURNAL   PLoS One 12 (2), e0172527 (2017)
   PUBMED   28225833
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1310)
  AUTHORS   Szereday,L., Meggyes,M., Halasz,M., Szekeres-Bartho,J., Par,A. and
            Par,G.
  TITLE     Immunological changes in different patient populations with chronic
            hepatitis C virus infection
  JOURNAL   World J Gastroenterol 22 (20), 4848-4859 (2016)
   PUBMED   27239111
REFERENCE   5  (bases 1 to 1310)
  AUTHORS   Alagarasu,K., Bachal,R.V., Shah,P.S. and Cecilia,D.
  TITLE     Profile of killer cell immunoglobulin-like receptor and its human
            leucocyte antigen ligands in dengue-infected patients from Western
            India
  JOURNAL   Int J Immunogenet 42 (6), 432-438 (2015)
   PUBMED   26385514
REFERENCE   6  (bases 1 to 1310)
  AUTHORS   Pydi,S.S., Sunder,S.R., Venkatasubramanian,S., Kovvali,S.,
            Jonnalagada,S. and Valluri,V.L.
  TITLE     Killer cell immunoglobulin like receptor gene association with
            tuberculosis
  JOURNAL   Hum Immunol 74 (1), 85-92 (2013)
   PUBMED   23073291
REFERENCE   7  (bases 1 to 1310)
  AUTHORS   Lourembam,S.D., Sawian,C.E. and Baruah,S.
  TITLE     Differential association of KIR gene loci to risk of malaria in
            ethnic groups of Assam, Northeast India
  JOURNAL   Infect Genet Evol 11 (8), 1921-1928 (2011)
   PUBMED   21889618
REFERENCE   8  (bases 1 to 1310)
  AUTHORS   Oliviero,B., Varchetta,S., Paudice,E., Michelone,G., Zaramella,M.,
            Mavilio,D., De Filippi,F., Bruno,S. and Mondelli,M.U.
  TITLE     Natural killer cell functional dichotomy in chronic hepatitis B and
            chronic hepatitis C virus infections
  JOURNAL   Gastroenterology 137 (3), 1151-1160 (2009)
   PUBMED   19470388
REFERENCE   9  (bases 1 to 1310)
  AUTHORS   Hoelsbrekken,S.E., Nylenna,O., Saether,P.C., Slettedal,I.O.,
            Ryan,J.C., Fossum,S. and Dissen,E.
  TITLE     Cutting edge: molecular cloning of a killer cell Ig-like receptor
            in the mouse and rat
  JOURNAL   J Immunol 170 (5), 2259-2263 (2003)
   PUBMED   12594244
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF527797.1.
            
            On Jun 3, 2003 this sequence version replaced NM_181479.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF527797.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="PVG"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1310
                     /gene="Kir3dl1"
                     /note="killer cell immunoglobulin like receptor, three Ig
                     domains and long cytoplasmic tail 1"
                     /db_xref="GeneID:353253"
                     /db_xref="RGD:727836"
     exon            1..40
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..1275
                     /gene="Kir3dl1"
                     /note="killer cell immunoglobulin-like receptor 3DL1;
                     killer cell immunoglobulin-like receptor, three domains,
                     long cytoplasmic tail, 1"
                     /codon_start=1
                     /product="killer cell immunoglobulin-like receptor 3DL1
                     precursor"
                     /protein_id="NP_852144.1"
                     /db_xref="GeneID:353253"
                     /db_xref="RGD:727836"
                     /translation="MMFEFLSLLCSGFFLVQRMSAHMGSYDKPFLCASPSYIVPQGQN
                     VTLICDSHSKPNIFKVYKEDGFPILQLHEKTFTKSLDIGPVTPEYAGTYRCFHHQYPN
                     EISAHSEPLKIIISGIYMKPFLIAPQTPLANSGENVTLECHSEIMFDTYILTSHRMEI
                     LKETLQHFQESHFSGSYASFTIGPMTPDHSGTYTCYGAYNHSLYEWSDSSDPVDIKIT
                     GEYKKPSLSSVMSPVLVSEQNMTLSCISNHQFEMFHLSREGVPQGKGIPAMQSHSGKF
                     EAKFLLSPVIQKGNYRCYGSFKNSSHVWSSPSDPLYLPAKDNLKNLHIQIGLLVTMVL
                     VIVVIIIIIIIIIIIIYYYYFSKKSSILEQESEVKATINRQDPERQEEHKVTYIEFEQ
                     RIFNKNLMPPISQSPKEFSIDTVVYTEVMI"
     exon            41..76
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            77..355
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            356..661
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            662..955
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1081
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1131
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1293
                     /gene="Kir3dl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaaccatga tgttcgagtt cctaagccta ctgtgttctg gtttcttcct agtccagagg
       61 atgtcagcac acatgggaag ttatgataag ccttttctct gtgcctcgcc aagttatatt
      121 gttcctcagg gacagaatgt gactcttatt tgtgactctc atagtaaacc taacatattc
      181 aaggtgtaca aagaagatgg gtttcctatc cttcagttac atgagaaaac attcacgaag
      241 agccttgaca ttggtcctgt aaccccagaa tatgcaggca cctacagatg ctttcatcat
      301 caatacccta atgaaatttc agcgcatagt gaacctctga agatcataat ttcaggaatc
      361 tacatgaagc ctttcctcat agctccacaa actcccctgg caaattcagg agagaatgtg
      421 accctggagt gtcattcaga gattatgttt gatacctaca ttttgacttc acacagaatg
      481 gaaatactaa aagaaacttt gcagcatttt caagaatctc attttagtgg gtcttatgcc
      541 agtttcacaa ttggtcccat gacacctgat cacagtggaa catacacgtg ctatggtgct
      601 tacaatcata gcttatatga gtggtcagac tctagtgacc ccgttgacat caagatcaca
      661 ggtgaataca agaaaccttc tctgtcgtct gtgatgagcc ctgtactggt gtcagaacag
      721 aacatgaccc tgtcctgcat ctctaaccat cagtttgaaa tgttccatct gtccagagaa
      781 ggggtgcctc aaggaaaagg gatacctgca atgcagagcc acagtggtaa atttgaagcc
      841 aaattccttc ttagtcctgt gatccaaaaa gggaactata gatgctatgg ctctttcaaa
      901 aactcttccc atgtgtggtc atctccaagt gaccccttgt accttcctgc caaagataac
      961 ctcaagaacc tgcacattca aattgggctc ttagtgacca tggtccttgt catcgtcgtc
     1021 atcatcatca tcatcatcat catcatcatc atcatttatt attattactt ttccaaaaag
     1081 agcagcattt tagaacaaga gtctgaagtt aaagcaacaa taaacagaca ggatcctgaa
     1141 agacaagaag agcataaggt gacatacata gaatttgagc agaggatctt caacaaaaac
     1201 ttaatgcctc ctatttccca gagtcccaag gagttttcta tagatactgt tgtgtacaca
     1261 gaagttatga tatgataaac tgagatcaaa gaaaaaaaaa aaaaaaaaaa
//
