LOCUS       NM_001192000            2950 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus kinesin family member 9 (Kif9), transcript
            variant 1, mRNA.
ACCESSION   NM_001192000 XM_039081989 XM_576475
VERSION     NM_001192000.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Cornfine,S., Himmel,M., Kopp,P., El Azzouzi,K., Wiesner,C.,
            Kruger,M., Rudel,T. and Linder,S.
  TITLE     The kinesin KIF9 and reggie/flotillin proteins regulate matrix
            degradation by macrophage podosomes
  JOURNAL   Mol Biol Cell 22 (2), 202-215 (2011)
   PUBMED   21119006
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Oct 3, 2022 this sequence version replaced
            XM_039081989.1, NM_001192000.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.46920.1,
                                           SRR26360176.1655400.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000008.1  119338099-119338187
            90-332              JAXUCZ010000008.1  119339108-119339350
            333-430             JAXUCZ010000008.1  119344344-119344441
            431-596             JAXUCZ010000008.1  119346570-119346735
            597-703             JAXUCZ010000008.1  119348326-119348432
            704-928             JAXUCZ010000008.1  119349814-119350038
            929-1012            JAXUCZ010000008.1  119353004-119353087
            1013-1105           JAXUCZ010000008.1  119353195-119353287
            1106-1253           JAXUCZ010000008.1  119354658-119354805
            1254-1318           JAXUCZ010000008.1  119355765-119355829
            1319-1396           JAXUCZ010000008.1  119360976-119361053
            1397-1465           JAXUCZ010000008.1  119365614-119365682
            1466-1570           JAXUCZ010000008.1  119366064-119366168
            1571-1626           JAXUCZ010000008.1  119367919-119367974
            1627-1717           JAXUCZ010000008.1  119368981-119369071
            1718-1851           JAXUCZ010000008.1  119369869-119370002
            1852-2046           JAXUCZ010000008.1  119372244-119372438
            2047-2261           JAXUCZ010000008.1  119375328-119375542
            2262-2438           JAXUCZ010000008.1  119376995-119377171
            2439-2554           JAXUCZ010000008.1  119377449-119377564
            2555-2659           JAXUCZ010000008.1  119379053-119379157
            2660-2950           JAXUCZ010000008.1  119382594-119382884
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2950
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /note="kinesin family member 9"
                     /db_xref="GeneID:501059"
                     /db_xref="RGD:1565187"
     exon            1..89
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            90..332
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     CDS             296..2710
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /note="isoform 1 is encoded by transcript variant 1;
                     kinesin-like protein KIF9"
                     /codon_start=1
                     /product="kinesin-like protein KIF9 isoform 1"
                     /protein_id="NP_001178929.2"
                     /db_xref="GeneID:501059"
                     /db_xref="RGD:1565187"
                     /translation="MKRHKNGNKQYLSRMGTRKKVQAFVRVKPTDDFAHEMIKYGEDN
                     KSIDIHLKKDTRRGAVNNQQTDWSFKLDGVLHDASQDLVYETVAKDAVSQALDGYNGT
                     IMCYGQTGAGKTYTMTGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYN
                     ENLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRII
                     ASHTMNKNSSRSHCIFTIYMEAHSRTLSDEKYITSKINLVDLAGSERLSKTGSEGRVL
                     KEATYINKSLSFLEQAIIALGDQNRDHIPFRQSKLTHALKDSLGGNCNMVLVTNIYGE
                     AAQLDETLSSLRFASRMKLVTTEPAINEKYDAERMVKNLEKELALLKQELAIHDSLSN
                     RTLVNYDPMDEIQIAEINSQVRRYLEGTLDEIDIINLRQIQEVFNQFRVVLSQQEQEV
                     ESALRRKYTLIDKNDFAAISAVQKAGLMDVEGHLVGEPDGQSFGLGVAPFSVKPGKKS
                     KTKKTTKDQFSSSARKEGASSPVSGKDFDMTSISKTQLIPSSKEGDLKDMLVRERETS
                     SIEPLPSDSPKEESRALRPSTPPSKPVAFEEFKNERGSEINRIFKENKSILNERKKRA
                     SETTQRINAIKQEIDVTKEALNFQKSLREKQGEYENKGLMIIDEEEFLLILKLKDLKK
                     QYRNEYQELRDLRAEIQYCQRLVDQCRHRLLMEFDIWYNESFVIPEDVQVALKLGSSI
                     RPGMVPITRIVCLGEDDQDRFSQLQQTVLPEGPDSISFYNAKVKTEQKHSYMKTMVGL
                     QQSHRK"
     exon            333..430
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            431..596
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            597..703
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            704..928
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1012
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1105
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1253
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1318
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1319..1396
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1465
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1466..1570
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1626
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..1717
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..1851
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            1852..2046
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2261
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            2262..2438
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            2439..2554
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            2555..2659
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
     exon            2660..2950
                     /gene="Kif9"
                     /gene_synonym="RGD1565187"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcggctagt cgtcctggtt gcctacagag ctccctcaag ttgctgcagt tatagcggtc
       61 gctctccagg agcgccgctg cctcgcgagt agtggctgaa gatggaccca ccaatggaga
      121 ttcagtcacc ctctgacttc cagctatgag tatcaccttc aactaccatt tcttgagcac
      181 ctggtgtgtg ctgggcgctg ttctggacct tgtgggggga atcacaggag ataaaagaca
      241 caatcgttat cctcaagcag cttgtaattc tatttgggag ctgaagcccg cataaatgaa
      301 gcgacataag aacggtaaca agcagtatct cagtagaatg ggtactagga aaaaggttca
      361 agcctttgtt cgtgtcaagc ctactgacga ctttgcccat gaaatgatca aatatggaga
      421 ggacaacaaa agcattgata ttcatttgaa aaaagacact cggagaggag ccgtcaataa
      481 ccagcagaca gactggtcat tcaagctgga cggagttctt catgatgcct cccaggactt
      541 ggtttatgaa acagttgcca aggatgcagt ttctcaggcc cttgatggat acaacggtac
      601 catcatgtgt tacgggcaga caggagctgg caagacatac accatgacag gggcaacgga
      661 gaattacaag caccggggta ttctccctcg tgccctgcag caggtgttta ggatgattga
      721 agagcgtccc acacacgcca tcacagtccg tgtctcctac ttggaaatct acaatgagaa
      781 cctgttcgat ctcctgtcca ctctgcccta tgttggaccc tcagtcaccc caatgactat
      841 cgtggaaaac cctcaagggg tcttcattaa aggcttgtcc gtgcatctca ccagccaaga
      901 ggaggacgcg ttcagcctcc tctttgaggg agagaccaac aggatcattg cctcccacac
      961 gatgaacaag aactcatcca ggtcacactg cattttcacc atctacatgg aggctcattc
     1021 tcggacctta tcagatgaaa agtatatcac ttccaaaatc aacctggtag acctggcagg
     1081 ctcagagagg ctcagcaaga cggggtcaga aggtagagtc ctaaaggaag ccacctacat
     1141 caacaagtcg ctgtcattct tggagcaggc tatcattgcc ctgggggacc agaatcggga
     1201 ccacatccct ttccggcaga gcaagctcac ccatgctctg aaagactcct tagggggaaa
     1261 ctgcaatatg gtccttgtga caaacatcta tggagaagct gcccagttag acgaaacgct
     1321 atcttcgttg aggtttgcca gcaggatgaa gcttgtcacc actgagcctg ccatcaatga
     1381 gaagtatgat gccgagagaa tggtcaagaa tttagagaag gaactggcat tgcttaagca
     1441 ggaactggcc atccatgata gtctgtccaa ccgcaccctc gtgaattatg accccatgga
     1501 tgagatccag attgctgaga tcaactccca agtacggagg tacctggagg ggacactgga
     1561 cgagattgac ataatcaatc taaggcagat tcaggaggta ttcaaccagt tcagggtggt
     1621 tctgagccaa caggagcagg aagtagagtc tgccttgcgc aggaagtaca ctctcataga
     1681 caaaaatgac tttgcagcca tttctgctgt ccagaaggca gggcttatgg atgttgaagg
     1741 gcacctggtg ggtgagcctg atggacaaag ctttggactt ggggttgctc ctttttctgt
     1801 caaacctggg aagaaatcta agactaagaa gacaaccaaa gaccagttca gctcctcagc
     1861 aagaaaggaa ggtgccagca gccctgtgag tggcaaggac tttgatatga cttccatctc
     1921 caagacccag ctgatcccat cttccaaaga aggggatctc aaagatatgc ttgtgcgaga
     1981 aagggaaact tccagcattg agccccttcc ctcagactct ccaaaggaag aatctcgtgc
     2041 actcagaccc agcaccccac cttctaagcc tgtggccttt gaagagttta agaatgaacg
     2101 aggtagtgag atcaaccgca tcttcaaaga aaacaaatcc attttaaatg aacggaagaa
     2161 aagggccagc gagacaaccc agcgcatcaa tgccatcaag caggagattg atgtgaccaa
     2221 agaggcactg aatttccaga agtcattacg ggagaagcaa ggagagtacg agaacaaagg
     2281 cctgatgatc attgatgagg aggaatttct gttgatcctg aagctcaaag atctgaagaa
     2341 gcagtatcga aacgagtacc aggaacttcg agacctccgg gctgagatcc agtactgtca
     2401 gcgcctggtg gatcagtgtc gccaccgctt gctcatggaa tttgacatct ggtacaatga
     2461 gtcctttgtc atccccgagg atgttcaggt agcactgaag ctaggcagca gcatccggcc
     2521 aggcatggtg cctatcacca ggattgtatg tctgggagaa gatgaccagg acaggttcag
     2581 ccagctgcag cagactgtct tgcctgaggg tcctgattcc atctccttct acaatgccaa
     2641 agtcaagaca gaacagaagc acagttatat gaaaaccatg gtgggcctcc aacagtcaca
     2701 cagaaaatag tctcatccgt agcttgaagg ccagcagctc tagtctgctc tcaggaagct
     2761 gctaagccac atgctcagag ctccagccac tcagctgcac gatgggacca aacccagaga
     2821 gcacacaatt gcctgcctac taggatgaac atcctccaaa ggacaccctt gctcctcttc
     2881 acagaatatt tttgatttta cgttactacc atgtgtaaaa gcaagataaa attatgtttt
     2941 atttcctgtc
//
