LOCUS       NM_001162897            3926 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus KIAA0040 ortholog (Kiaa0040), mRNA.
ACCESSION   NM_001162897
VERSION     NM_001162897.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3926)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ232614.1, SRR26643285.36668.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               JAXUCZ010000013.1  74807982-74808343
            363-434             JAXUCZ010000013.1  74823376-74823447
            435-3926            JAXUCZ010000013.1  74842039-74845530
FEATURES             Location/Qualifiers
     source          1..3926
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q22"
     gene            1..3926
                     /gene="Kiaa0040"
                     /note="KIAA0040 ortholog"
                     /db_xref="GeneID:100302372"
                     /db_xref="RGD:2311260"
     exon            1..362
                     /gene="Kiaa0040"
                     /inference="alignment:Splign:2.1.0"
     exon            363..434
                     /gene="Kiaa0040"
                     /inference="alignment:Splign:2.1.0"
     exon            435..3926
                     /gene="Kiaa0040"
                     /inference="alignment:Splign:2.1.0"
     CDS             565..867
                     /gene="Kiaa0040"
                     /codon_start=1
                     /product="uncharacterized protein KIAA0040 homolog"
                     /protein_id="NP_001156369.1"
                     /db_xref="GeneID:100302372"
                     /db_xref="RGD:2311260"
                     /translation="MERNSTFFDSIWETILTRHERGVFNTVCLAVLLGLPLVVLLTLF
                     FICCHCCCSRPPKSNQQAEQNKKKKKKKKKKKKDEDLWISAQPKLLQMEKRPSLPV"
ORIGIN      
        1 ctggcctgga gacccggagg aaggacaccc gcgctgctgt ggcgtgtgcg tcctagttta
       61 aggtatgagt tgggctgggg agcggcggag ccagccagtc agattcagga agtcgagttc
      121 ctgacctcat gagcagagct gggtgctgtg aaacctcaac cagggacgcg ggggcgcttt
      181 cctccgcaac acacgggtgg cacccactga tccgcagaac ctcctccctc ccgggacctg
      241 gcagtgggag ggaggggcta gaggagggac ccagacctca accctgtgcc caagtcactt
      301 cagacagcac cggaacagat ccagcggtcc tgccagcagg aagccttcca gcggacccaa
      361 agattatccc caggatggag ataaagaaac cgaggcccag agcaactgag tgattgtctc
      421 atgacacatc cttagtgctc ccagtggctt ccccaaatgt gaagccaaaa gaaaaataaa
      481 ttccaagtgg ctaacaccgt gttctgtgag gcccagggct tgttagataa ttgggatcct
      541 ctggccccac actagcccag caccatggaa agaaacagta ccttcttcga ctccatctgg
      601 gaaaccatcc tgaccagaca cgaaagaggg gtcttcaaca ccgtctgcct ggctgtgctc
      661 ctggggctgc ccctggtggt gcttctcacc ctcttcttca tctgttgcca ttgctgctgt
      721 agccggccac ccaagagcaa ccaacaggca gaacagaaca agaagaaaaa gaaaaagaag
      781 aagaagaaga agaaagatga agacctctgg atctctgctc agcccaagct cctgcagatg
      841 gagaagaggc catcactgcc tgtctagtga gcaaggaagc caaccacaga gacttagagg
      901 agtctttaaa gtgatgcatt tacacccaca gattactcaa ccaagggaca gatttcagac
      961 tgagcatccc aatggaccag agtgtataga caattcttac aatgtcttgg cagctatgtg
     1021 tctgataaca gtgctctctg gtgtagcatg tgctgtggtt tctggtatac tctctcacaa
     1081 aagcacagaa aacatgtata catgcatctt agatagcatt caactctgta tgcatcatat
     1141 gtatgcacat ttggacaaca ggtacatggg acaggatatt ctatttatca cgtggccatg
     1201 taataagtat ttttgctcaa atatacctac ctgaaatgcc tatgggaagg cattccggtt
     1261 tgggcacatg tgcacaatta agtagccatg atgcaagttg gcattatgca ctgtctgtat
     1321 gccacacagg gtggagacgg atgcttcctg tttctattcc tacatagcat ttactggaaa
     1381 tgcatttgga cattctagga acctggtaca gtccccactt cgctatacat tgatatggat
     1441 agcaggtggc ttctatatgt gcctgacctt tttcctgtac ctaaaagttt aaagtatggc
     1501 tccaaatcca ctcaaagctc tttgcttgca attcacgaca aggtcctcat tacctctgac
     1561 agctgtttaa tggggtccca gacctctcgg ggacattacc ccataactac tcagcaaggt
     1621 gcccttttct aagcagtgat aaacagctct tggcagtgac tacaagaaag ctatggaaat
     1681 ccgcatattc acttcattgg actgcaggtg tgtatccatg agatgtatat ggagatagaa
     1741 agggtaaagc aatggcccac aggagctagc tataatccgt gtgaccaggg ctttcagaat
     1801 gaaaacaagt gagatcatcc caagtccagt ctcataacca gtgcacatgc gcgcacgcgc
     1861 gcacgcacgc acacacacac acacacacac acacaccaca acacatacca gaagcaatcc
     1921 cttgtgcttg cagcagtgca ggatgtgtct cgggtgggag gtagaagcca tagtttaaat
     1981 gaaagataaa actgtaaaga tatttgttgc catttatgtt gaagctcagg cacatagctt
     2041 gtacacagta ggtactcaga actgtggatg gatatacagt gatgttaagg ataaacttgt
     2101 aatacctcac aggtccccca agtgacctac tcatttaaga gaccccatta actgctccag
     2161 aagctgagac aaagcattga gacctgggtg gtattgatat atgtgctctg tggtacctga
     2221 ggccatgcca tattctgagt ggaggagagc cctcccccac ccccccagcc tccacaggct
     2281 cgaaaaacaa aaaacaaaaa aaaatcaaat tgcttggcat tttgattgta ttgtggccgc
     2341 gttacaaagg cagagaattc ccagcttgga ggtgattaca ctctaacagc tcatttgcac
     2401 atctactggg gagcgctata aatattgtcc ctacagagac cattatagac agtggaaaaa
     2461 atcactgtct aattaatgac atagccaaat tatgacatta taacagcaag aaaaaaattc
     2521 ctggactcga tgagactgtg tgaatggaag gttgtactcc atttgttcag ctgggctgcc
     2581 tggtactcgt ggttctactc cgactgtgct ccaggccctt ggagggtagc tgcctagtgg
     2641 tagttcttac agctgggtca gtcacattca ctcactcatc ctgcataacc tcaatgtcac
     2701 taggcactca ggccttccac ccacaggcct ctctgaccaa agcaacactt tctgattctc
     2761 taccaccttg ccacataggg agttgtggat tacctggctg tcccccacat gtcacataat
     2821 agtcagtctt ctccccttct gtgctacttg gtacccacca gatgtccttc ccacttctct
     2881 cagtcaccct aagacagaag acttggggga agaggtggag acacagcaga ggtgggatgt
     2941 cagatacagg atcagggacc atacgaataa cactgtttcc gtgacaactg gctgccagtt
     3001 tgaattaaga cagaagtcgg tttttactga ttgccatagt gaagcttccg tctccgggcc
     3061 cagtgtacct actgcttcct gatcaaatag acttgagcta gttcctgtca cgaaacatcc
     3121 agaagggcaa ttcccagttg tttctgtatc ctggaatcca ggagtcccaa ccctgattgg
     3181 atcacacttc ctgtcacaga ctgtctgaca gccgggtcca cgatgtgata ggccctccca
     3241 cagatgccag agaacagaga cccaaagtgg tgcttggtac tgccttcctg cctcacaccc
     3301 tgccagtcct tctcgtgttg cttcttctcc ttgcatcata ccaggtcctt cctttatgac
     3361 gacacatttt ccccttgctt catcccagag ttaccatgga tatagtcgtg gggtaggggg
     3421 cttgggacct gtgcctacct gatccaccta ggtaagttaa tggaacaaaa gaggctccag
     3481 ggaactggag gaatggctca gcagttaaga gcacttgttg cttttgtaga agacgcaggt
     3541 accaggcacg catgtggtac gcatgtatac ataggcaaac ctctcataca catcaaataa
     3601 atctctttta aaagtaggat ccacaaagaa tagaccttct aaactggcat ggacttgggc
     3661 gtagggttgt tcccacccac ggtggacttc taatctgcct tggtcatact cagaaaccat
     3721 cagaggggtc tttatccatt gttctgtgga cttttttgat ttcttgggag gaggaaaaag
     3781 aacaggaaaa tgtaaagaaa aagcagtcac ttttttgaga agaatatata aatgatccaa
     3841 gctgtacagt atttgtcagt gttttgtttc ctgtaaaatt caaatacata taaaagttta
     3901 tttaaataaa tattttgaaa atgaaa
//
