LOCUS       XM_039093837            5937 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus KH and NYN domain containing (Khnyn),
            transcript variant X2, mRNA.
ACCESSION   XM_039093837
VERSION     XM_039093837.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5937
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5937
                     /gene="Khnyn"
                     /note="KH and NYN domain containing; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 24
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 54 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:498517"
                     /db_xref="RGD:1565688"
     CDS             203..2254
                     /gene="Khnyn"
                     /codon_start=1
                     /product="protein KHNYN isoform X1"
                     /protein_id="XP_038949765.1"
                     /db_xref="GeneID:498517"
                     /db_xref="RGD:1565688"
                     /translation="MSIWGFASPTPDRFAVSAEAEDKVREQQARLERIFSVGMSVLSK
                     DCPENPHIWLQLEGPKENICRAKEYLKGLCSPELQSEIRYPPRLHCIFVGAQGFFLDC
                     LAWSTSAHLVPLVPGSLMISGLTEAFVMAQSRVEELAQRLSWGLLPLSCPGALDNGRV
                     LRDFSALLQTREDAYTEALLQLPLAVQEELLSLVQEASRGQGPQTLPSHEVGSPGMLS
                     SQYQGVRAPLSEDRESLATGVAGLGKSQAVRGPSHAVEKEGRKQDAVRDMGSGWKEPS
                     GEEVCETGVAFRSQLAGGGAEEVAPLKGRAFGKQEVPQQRGGFGVQGEPSGAHVPCQR
                     AAPTRGASLLQRLHNGNTSPLRVPSPPPAPEPPWPCGDRDRDRDRDRDRDRDRGDRGD
                     KQQAGARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLCLANVPGQPDLRHVVIDGS
                     NVAMVHGLQHYFSSRGIALAVQYFWDRGHRDITVFVPQWRFSKDSKVRESHFLQKLYS
                     LSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRE
                     RLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPVRKQGSSKSQQPSKGPTEHGHQQQG
                     KEVEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLN
                     F"
ORIGIN      
        1 ctaggttggg ggaaggaccc gagaaggccc tcctaggttc gggctcccat ccccagaccc
       61 ctggggcgcg ggagaagcgc gcccgttccc ccaccctgcg agcacctaga agagagggcg
      121 aaactctcgg ctttggcggt ggacttgcta cctcctgggg ctgtttacca gttctgtaac
      181 taggactcca caggtagaag ccatgtctat ttgggggttt gcctccccga ctcccgaccg
      241 ctttgcggtg tctgcggagg ccgaggacaa ggttcgggaa cagcaggctc gcttggagcg
      301 tatcttcagc gtaggaatga gcgtcctctc caaagactgc ccagagaacc ctcacatctg
      361 gttacagctt gagggcccca aggagaacat ctgcagagcc aaggaatacc tgaaggggct
      421 ctgcagtcca gaactgcaga gtgaaatccg ctacccaccc agactgcact gcatctttgt
      481 gggagcccaa ggcttcttcc ttgactgcct ggcctggagc acttctgccc acctggtgcc
      541 tctggttcct ggctctctga tgatcagtgg cctaactgag gcgtttgtga tggcccaaag
      601 ccgggtggag gagttagcac aacgactgag ctggggcctt ctgccactgt cttgtcccgg
      661 agcccttgac aatggcagag tgctgagaga cttctctgcc ctgctacaga ctagggagga
      721 tgcctacaca gaggccctgc tgcagctgcc cctggccgtg caggaggagc tcctgagcct
      781 ggtgcaggag gcttctagag ggcagggtcc acaaacactg ccctctcatg aggtggggag
      841 cccaggcatg ttgagttctc agtatcaggg agtcagggct cccttgagtg aagataggga
      901 atccctggcc actggagtgg cagggttggg aaagtctcag gcagtgagag gacccagtca
      961 tgctgtggag aaagagggaa ggaaacagga tgctgtcagg gacatgggtt caggatggaa
     1021 ggagccgtct ggggaagagg tctgtgagac aggagttgct tttaggtcac agctagcagg
     1081 tggaggagca gaggaagtag cacccttaaa aggaagggcc ttcgggaaac aggaggttcc
     1141 tcaacaaaga ggagggtttg gtgttcaggg tgaaccttct ggtgcccatg tgccttgtca
     1201 gagggcagct ccaacccggg gagcctctct cctccagcgg ctccataatg ggaacacctc
     1261 gcctctgaga gtacctagcc ctccgccggc gccggaaccc ccttggccct gtggagaccg
     1321 agaccgagac cgagatcgag atcgagatcg agatcgagat cggggagaca ggggagacaa
     1381 gcagcaggct ggggctcgag gccgagggtc tccatggaaa cgaggcactc gtggtggcaa
     1441 cttggtgact ggcacacagc gtttccagga agccttgcag gatcctttca ccctgtgcct
     1501 tgccaatgtg cctggccagc cagatctccg ccatgttgtc attgatggca gcaacgtggc
     1561 catggtgcac ggcctccagc actacttctc aagtcggggc attgctcttg ctgtgcagta
     1621 cttctgggac cgtggccacc gtgacataac cgtctttgtg cctcagtggc gcttcagtaa
     1681 ggattccaag gtcagagaga gtcacttcct gcagaagctg tactccctga gtctgttgtc
     1741 cctgacaccc tcccgagtga tggatggcaa gaggatttct tcttacgatg acaggttcat
     1801 ggtgaagctg gctgaagaga ctgatgggat cattgtctcc aatgaccagt tccgggatct
     1861 ggctgaggag tctgacaagt ggatggcgat catcagagag cgccttctgc ccttcacctt
     1921 tgtggggaac ctcttcatgg tcccagatga tccactgggg cgaaatggcc ccaccctgga
     1981 tgagtttctg aagaagccgg tcaggaagca gggctcctct aagtctcagc agccctccaa
     2041 aggtcccaca gaacatggtc atcagcagca ggggaaggaa gtggagaagg gcagtggtgg
     2101 cattcggaag acccgggaga cagagcggct ccggcgccag ctgcttgaag tgttttgggg
     2161 tcaggaccac aaggtggact tcatcctgca gcgggaacca tactgccggg atattaatca
     2221 actttctgag gccctgctga gtctcaactt ctgagccttt ctgccctgca tagctgctac
     2281 cctactagaa tcagcctccc ccagcccagc ctcctcactt atggtccctc tgctgttcag
     2341 actatgacct agactcattc taaaatggcg tttcagccag acaaagtacc agagaagaga
     2401 atttgagtgt gggaatactc ttgcctgagg tactttaagg acagatcctt aaagtgactc
     2461 aacgtgaggg aggagtgcag ccagcattcc ttcagacaca cgagggtaca actcgtaccc
     2521 tcgtgaggtt ttgatcagac tccactcctc aactttgtct taacagaggg tttctgtagg
     2581 gtgcagaggc tgttcctgga gatggagact gtggcttcat taccaagtta cttggttgga
     2641 ggctagggta gcctggaggg gacacaaagg gtaagccgag aaagaaagcg ccctctggct
     2701 gcccctctga gtggctagga taggctgagc tgtaccctcg tgtgtctgaa ggaatgctgg
     2761 ctcctggagg ggtcacagcg ctatgtgcac tgttgtagtg ggacagctga gaggcagaag
     2821 gtagaggcgg gcaggcttcc agtctcagtt gtgccttggt tgtgaccttg acggagttgc
     2881 ttggccttta cttcgggcat aaaaataact ttgagggaaa cgagaacaga gaaggcggct
     2941 cccgtgagga actgtgtaca tggatcatgg ctcaggtgtg gctgcctgtg gctgcacagg
     3001 ctccctaacc aaaacttcac tttcagaggt gtccactgtc tataccctcg attttcacgc
     3061 tgggttttcc gtagaacatg ccctgtaatg gctgcattcc tttccagcaa ccttcaaaac
     3121 gcgttaacag aatagtcaag gtagggttga cggatgcgtt acttcagtac tctcagggct
     3181 cctctaaatg gcagctggtc aagtgtttca agtgtttaca gatcgacgag gccccggtta
     3241 aatcctcttt ctggtgttgg gcctagtcac caaacccatg acgtcatgat tcgcagtgct
     3301 taatgagacc tatctaatat tttctttatg aaagacagga ttcattcggc aaagacacac
     3361 tgctgcatat cgggtgtctg ggaagtggag ctgaagcctc aggattgaaa gatacctgat
     3421 tggttacaga ccaactccac tgacctatcg tgacaccctg tttacattcg aattcccaca
     3481 cgtcattgtt ttctctctga actctttctg tgccagggaa tttactatca acaaggtggc
     3541 acattcctta tgtggacctg ttaatcagtt tttctctagt gtagtctaac atgcttttct
     3601 gttttacttt tatcttcccc aggaataatt cagagctggt taacttttta gaggctaggg
     3661 tcagatagag gtataaaaag gtgaggcagg tgcccctggg ttcatgtagt aagtccccca
     3721 attaattaga tggtttcctg actctgactt actccaggag acacagagag ttgactgtgt
     3781 ggccctttgg gtcccagtgt ccttgttttg ttgggcaatt ttcagttcac gcaaggtgag
     3841 gtgttggaga caagttgatc agggaaatga caagggaaga gaagagagtg gtctggactg
     3901 ggcactggta gaactgctct ttaagtttgt gattggtgtc ttgctctttt tgcctgccat
     3961 gatggtgggt gtacaggggg ctgggattat cttccctttt atgctatggg gcctggaagg
     4021 ctgaatgttc ccaagaagat gagagacgaa gcctaggttt atagagggac agcgactctg
     4081 tcttactgca gtatgacaag ctggaacctg gatgtgttta ttaattcatg gccgtttggt
     4141 gaatgctgaa ggctaactaa cctacagggc ctttcctctc cactttggct ggcatcctct
     4201 gaacaggtgg tcaggtgacg ccagaactca ctggaaatag atttttatat atattatctt
     4261 taatctctgt tataacctca tgtctcccca gttcgtttgg gaagagagac catgaaagga
     4321 aaggatgagg agagaggtaa aatgttcagg accccgttta gggagaagag ccaggtagag
     4381 gaatagttct aaagataatt ccaggggagt acaaaccaaa gagacagctg aagccagtgg
     4441 tctacagaca cagtctacct ttattgccac aactgtagaa ctttgtctac atagcatgta
     4501 ggagaaccag ggcaacaatg tgacacagaa gccacaagaa gttgaggagg ttaaggttag
     4561 aatgagatta gatccttgag actggagttt cttggagaga ggtggatcaa cagaacatgg
     4621 gaagaaaggg gagagagaga gagtctaaga gccagatggc ttctgatctc agtcaagtac
     4681 agcaatcacc tgactcactt ctcagaatgc aggaacaggc cccacctcct gccttggggc
     4741 tcccttctct acttaggtta caacatcctt taaggcagct cctaactctg ggaaggaata
     4801 ctggtagccc gtggccagtg tcctccgggg gaccactttc tggccttcca acagcatgat
     4861 ggcacgctct cgtccaaaga ttgcttgtac cacagcgctg gggacaggta tgaaggctgg
     4921 gcggcccagg gcagcaccca aggcctgggc aaaatcggca ttggtagttg tagatgctgg
     4981 agctactcca ttcaggactc cttggacgtg gtttgcctca agggcatgat tcagaattcc
     5041 tgccaggtca ctaatgtgta tccaggggaa gaactggtga cctgaaccaa tggggcctcc
     5101 taggcccagg cggaagggca gaagcatgtg gccgatggca ccgcccctgc ggcccagcac
     5161 aacccctaaa gcagacagaa gggtggtaaa ggaaggttgt ttagtccttg gagagctgca
     5221 ctataatttc tcttctccct tcctcacagc cttcccatgt gcacttggga gtgggcagag
     5281 ttgagggctg tggatcttcc tggggctttc cctttgtgtt agctaaagtg atggtgtcct
     5341 ctcactgcaa actcacccct cctcagccca gaaatcttct actttgcttg gttcccaggc
     5401 ccttggtcct cacctgaacg taccacgacc tggcgtgtag actctccagg aagcctggct
     5461 gctgcttccc atttggttac caggttggag aaaaagtcaa aatcccctcc tgggctgtct
     5521 tcatcatact cctcagtcag gcttggctgg tagtaagctg tcacagaagg gcactcattt
     5581 gctctggcgg tccctggcct gctgggccct tcagtgaaag gctccttagc ctcaggctcc
     5641 ttggcccttt gggtttccac aggagaagaa aaccataact gtttcccccc ttgagcttct
     5701 ccatgtgttc atgcctgaaa gtgtagctat tggctctcag gctgcgtcca gaggctgcca
     5761 gcttgtagtg ggtggagaca gatgtaggtg ctaagctgct tgagctccac cattcttgac
     5821 atctgtgact ttttggcaag ttacttctct gtgtgcaaac tctgcatctt caatatggga
     5881 gtaactgtac ctacctcaaa gttgttgcaa ggattaaatg atatgtataa aatggta
//
