LOCUS       XM_039109016            9966 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lysine demethylase 7A (Kdm7a),
            transcript variant X1, mRNA.
ACCESSION   XM_039109016
VERSION     XM_039109016.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109016.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9966
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9966
                     /gene="Kdm7a"
                     /note="lysine demethylase 7A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 24 ESTs, 13 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     130 samples with support for all annotated introns"
                     /db_xref="GeneID:684297"
                     /db_xref="RGD:1592650"
     CDS             741..3551
                     /gene="Kdm7a"
                     /codon_start=1
                     /product="lysine-specific demethylase 7A isoform X1"
                     /protein_id="XP_038964944.1"
                     /db_xref="GeneID:684297"
                     /db_xref="RGD:1592650"
                     /translation="MAGAAAAVAAGAAAGAAAAAVSVSAPGRASAPPPPPPVYCVCRQ
                     PYDVNRFMIECDVCKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHR
                     HDYTEADDGSKPVQAGTRAFVKELRSRVFPSADEVIVKMHGSQLTQRYLEKHGFDVPI
                     MVPKLDDLGLRLPSPAFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPN
                     RPKVLNVISLEFSDTKMSELVEVPDIARKLSWVENYWPDDSVFPKPFVQKYCLMGVQD
                     SYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTNENLALYESWSSSVTQSEVFFGDKVDK
                     CYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPD
                     LFKFPFFEAICWFVAKSLLETLKELKEDGFQPQTYLVQGVKALHTALKLWMKKELVSE
                     HAFEIPDNVRPGHLIKELSKVIRAIEEENGKPVKSQGIPSVCPVSRPSNDASPPGHSR
                     RKMRRLRDHNVRTPSNLDILELHTREVLKRLEMCPWEEDILSSKLNGKFNKHLQPSST
                     VPEWRAKDNDLRLLLTNGRIIKDERQLFADRSLYTADSENEEDKKPTKKANVKTEQSS
                     GREAAESDGSPKPLNRIFPSVKSELRSRPSEYSDVSDSEDSGPDCTALKINFATEESE
                     SSGDEKKHEITSNFKEESDVVRNLLQKSQKPSRNEIPVKRECPTSTSTEEEAIQGMLS
                     MAGLHYSTCLQSTDCSGEKNSLQDPSSCHSSNPEFRQLYRYNKPVEFGYHAKTEDQDL
                     MTSSWNKQFDRTSRFNAQDLSRSQKYIKKESSSEISQKAQSRHCVDSNNSSIQNGKYM
                     LNHSLVSCQINNGSLSPERPIGETSFSVPLHPTKRPASNPPPISNQATKGKRPKKGMA
                     TAKQRLGKILKLNRNGHARFFV"
ORIGIN      
        1 tccaatcaac acacagatta ccaagttgct ctctgggaat ttgggcgcga cgcttttgga
       61 agtttgagtg cgtttcacaa ggcgttcctc cacctcggga ggcacaactg cctgacgtgt
      121 caccccggtt ggggcccacg caggacgggg gtggcatcct cagtgggcgg ctgctaactg
      181 acgtgagtcg aggcgaccct ggagggctga aacctcctag cttctctgct tcagaacaca
      241 gccacagcgt ccacctttca cacggcagga gcttccccgc agcctgggct tttcactcag
      301 gaacagggaa acccgctcca cgcacgctcc cgccgtgctc ctccgtccgg agtcgcgcgc
      361 ccgtcgccgc cactgcggcg cgtgccctcg cggcgtctcc gccccctccc acggccgcca
      421 gcccttctgc gggtcgctgc gcaggtcgac gcggaaggtg cagggagcgc gcgccgaggc
      481 tgagaacgtg cgcgagaggc acggccccgc ggagcgccgg aagcagccga caggcctcgc
      541 gcatcgcgcg cgccgccccc gcccctgagc cgcgaccttg ctcgcgcgcg cgcactaagg
      601 cgccgccgcc gctgccgccg ccgccgccgc cgccgccgcc ggggctgctg ctccggctgc
      661 tgcaggaggc ggcgctggct ggcggctgcg ctcgctccag tcggcaagcg gaggagcgag
      721 cgtgtgtgtg ttttttaaag atggccggag cggcggcggc ggtggccgcg ggagcagcag
      781 ctggagccgc cgcggcagcg gtgtcggtgt cggctccagg tcgggcctcg gcgccccctc
      841 cgcctccgcc tgtgtactgt gtatgccggc agccgtacga cgtgaaccgc ttcatgatcg
      901 agtgcgatgt ctgcaaggac tggttccacg gcagctgtgt tggtgtagaa gaacatcatg
      961 ctgttgatat tgacttgtat cactgcccca actgtgcagt tctacatggt tcttccttaa
     1021 tgaagaagag gaggaactgg cacaggcatg actacacaga agcggatgat ggctccaaac
     1081 ctgtgcaagc tggaactagg gccttcgtta aagaactacg ttctcgagtc ttcccaagtg
     1141 ccgatgaagt cattgtaaag atgcatggca gtcagctgac acaaagatat ctggaaaaac
     1201 atggatttga tgtccctatt atggtcccta aattagatga ccttggactc agactccctt
     1261 cacctgcttt ttcagtgatg gatgtggaac gttatgtagg tggtgacaaa gtgatagacg
     1321 ttattgatgt ggcaaggcag gcagacagca aaatgacact ccacaattac gttaaatact
     1381 tcatgaatcc taacagacca aaagtgttaa atgtgatcag ccttgaattt tcagatacaa
     1441 agatgtctga attggtggag gttcctgata tagccagaaa actttcgtgg gtggaaaatt
     1501 actggccaga tgattcagtc ttccccaagc cctttgtcca gaagtactgc ttaatgggag
     1561 ttcaggatag ctacacagat ttccacattg actttggtgg gacttcagtc tggtaccatg
     1621 tcctttgggg tgagaagatt ttttatttga taaagccaac aaatgaaaat ttggcactct
     1681 atgaatcttg gagttcatct gtgacccaga gtgaggtgtt ctttggagat aaagtagata
     1741 aatgctacaa atgtgtggta aagcagggac atactttatt tgttcctaca gggtggattc
     1801 atgctgtgct cacttctcag gactgtatgg cttttggagg taactttctg cacaacctca
     1861 acattggcat gcagctcagg tgttacgaga tggaaaaaag actaaaaaca ccagatcttt
     1921 tcaaatttcc tttctttgaa gccatatgct ggtttgttgc caaaagtttg ctggaaaccc
     1981 tgaaagaatt gaaagaagat ggtttccagc ctcaaactta cttagtccag ggagtgaaag
     2041 cgctgcacac tgctttaaag ttatggatga aaaaggaact tgtatctgaa catgcctttg
     2101 aaattccaga caatgttaga cctggacatc ttattaagga actttctaaa gtaattcgag
     2161 caatagagga ggaaaacggc aaaccagtta aatctcaggg aatcccttct gtgtgtccag
     2221 tttcacggcc ttcaaatgac gcatctccac ctggtcattc ccggagaaag atgaggagac
     2281 ttcgagatca taatgtccga actccttcta acctggacat ccttgagctt catacaaggg
     2341 aagtcctcaa aagattagag atgtgtccat gggaggagga catattgagc tctaaactga
     2401 atggaaaatt caacaaacat cttcagccat cttccacggt acctgaatgg agagcaaaag
     2461 acaatgatct gcgattactg ctgacaaatg gaagaataat taaagatgag agacagctgt
     2521 ttgcagatcg gagtctttat acagcagata gtgaaaatga agaagacaag aaaccaacaa
     2581 agaaggcaaa cgtgaagaca gaacagagct caggaagaga ggcagcagaa agtgacggat
     2641 ctccaaaacc acttaacaga atatttccaa gtgtgaagtc ggaactcagg agtagaccat
     2701 cagaatattc tgatgtctct gattcagaag actctggacc tgactgcact gcactgaaaa
     2761 ttaattttgc cactgaagag tctgaaagtt caggtgatga aaagaaacat gaaataacat
     2821 caaactttaa agaggagtcg gatgtagtga ggaacctcct tcagaagagc cagaagccat
     2881 ctagaaatga aattccagtt aaaagggaat gtcctacctc gacgagcaca gaggaagaag
     2941 ctattcaggg catgctgtcc atggcagggt tgcactattc cacgtgttta caaagcacag
     3001 actgcagtgg tgagaagaac tctctccagg atcccagcag ctgccacagc agtaaccctg
     3061 agtttaggca gttgtatcgc tacaataaac cagtggaatt tggataccat gctaagactg
     3121 aagatcagga tttgatgact tcttcctgga ataaacagtt tgatcgaact tcccgattta
     3181 atgctcagga cttaagtaga agccagaaat acatcaaaaa ggaaagctct tcagaaatca
     3241 gtcagaaggc acaaagcagg cattgtgtgg acagcaataa ctcaagcatc cagaatggaa
     3301 agtacatgct gaatcacagc ttggtttctt gccagataaa taatggcagt ctaagtccag
     3361 aaaggcctat tggtgaaact tctttttcag tgccccttca ccccaccaag agacctgcat
     3421 caaacccacc acctatcagc aaccaggcaa caaaaggtaa acgtccaaaa aaaggaatgg
     3481 caacagccaa acagcgtctt gggaagattc ttaaattgaa cagaaatggc catgctcgtt
     3541 tcttcgtgtg acagagctgc tattgcagtc actcttccct ttggatgcca gtcttggggt
     3601 gtggagcctg gtgtgtccac taccccctgc ctggagcagt tagtgtgtac agtaagaata
     3661 ctgcctggag aacagagaac ccgatgctgc atttcactgt gccacaccca ctcagcaata
     3721 acccttggac ctggcgggga gaggaaggag gagggtagaa ccttaaaaag aggccttgaa
     3781 ctggaaaggg gtctcttgtc agggcttgaa tttaattttg ttgttgatag tgtcttgatt
     3841 ttatttttca gtagtaggat aaagaattat caataattta tttaacagat ttttttttaa
     3901 agttaacagc ttttaaattc tttttttaaa gctatttatt tggaagattt ctggagaaat
     3961 atctcactaa tttagattta agaatgtgaa ggtttttaaa ttatttttga tagtgtgtgt
     4021 gttacatgtg gggaaaagcc acagtaacag tagctagtct ggactcttaa atttgatatt
     4081 caggttaaag tcttaaacag ggatttgatg cattaattat tttaaattaa gatgtatatg
     4141 aaatcatttt attttatata tttcatgtgt tttttataag ctattagctt cgcttttgct
     4201 aacatccaag gtgcatacta taatccaggt tgattccctt acaccccacc ttccctctgc
     4261 agcccaatcc ccagtgtttt gagacaaccc aagactcttc tctttgcagg gaaacacctt
     4321 catagccaat gtttaagaac cacataaaag agtcctcatt tctcatttct ttagacatgg
     4381 ttttcttcta caagtaatga atcaggctta tttcattttc atttttcctg atgatatctg
     4441 ggtcccaaag agaacagctt taatatcttt ttcctgctta tggggaaagt ataagtttgg
     4501 ttaaaatgtc atgtttgtcg tttttccgaa aacctttata attacagagg gccttcttca
     4561 atactgctgg tgttggaaga gccgacatct atcacagact atatcttacc atgcttttat
     4621 tatctagaca tcattttttt agaaatacaa tttgactaag gatgttcaaa tctgcataaa
     4681 agccgtgata tataccatat taagttgtat aatagcaagc atgtttgagt agagctttgt
     4741 gtgtgtgtgt gtgtgtgtgt gtctgtctgt gtgtgtgtgt gtgtttctgt gtgcacgtgc
     4801 acgctttttt attaatttac tgaagaatta tttcaataca gacttggagt aaaatgggtg
     4861 ctttttgcag tttcttccat ctgtcttgac tagtaggata tggaggttaa gtgtctggtt
     4921 gaactttaaa taagatagta atttatctcc tttatgtaca atttttactt aaatgcaatt
     4981 ttcagtggct tataatagtt tttagtctct ccattttccc ctcatggtat aaaaaataaa
     5041 ttaacattag aggtctgatg ataccacatt ttacaaattc ctacaaagac aatataggca
     5101 aacaacatga aatttatttt tatggagaac tatggctata taatggattt ttgtcctttt
     5161 cagctcagct aggtagctag cccttttctt ctgtaggaag cattgagttg aaagaaaaga
     5221 attatgcacc attatcttca tagttgattc aatatgtatt tccaaaggga aagatctcta
     5281 gttctgtctc ctttacaata cttagtggga caaggaagtt acaaactcac ctcctggtcc
     5341 agattgtctg gaccaaagtt caatcatatt ttggctgtca gggagaagat ttttatggaa
     5401 ttcttagtat ctgtagacag catccctaac ccctgcctac tctatgccat aactagtgag
     5461 agagggatgc agtcagctgg ttgttaattt caacatgcaa gaatctgaat ctgactgatc
     5521 gctcaccttt ccacaatgta tcactgtgat gtcttcgttt tgttttattg ttagaacaca
     5581 catttttatt tgggttaaga aataagagtg gtgacttctt ttcccagtta tgatctggat
     5641 ttgttttaaa caactcaaaa tattttttta attatttcat ttttttggcc ataaaaatta
     5701 aaatttatgc ttatgaatta aaattgtggc cagtatcttc cctgtgccca taggctgata
     5761 aacactaatt ttgggttgct acatatgtag tgttttaaat gatagttctg tggattcatt
     5821 attttatcat tttaacctat taatgggcta aattataaaa cttttagcca gttaatatag
     5881 ctactattaa agaacccatg tatctttctg aattgataaa aatttagcta cacagccaat
     5941 gagtttttct aatcaaactt cttataaagt tctccatctg tggtatgtcc ttttatctca
     6001 tagaaatggc tagactttga ggtgtgacta ctgctaggat ctgggctcaa cagtaatagg
     6061 taatctctgt tgttcccata gtctcacaag tagtatactg cagcttaact cagaagacaa
     6121 tggtgatagc atttagttag ctataagcaa gtaaaatgtg taaaattgag aattaataat
     6181 ttagtgtatg cagctttaat agtagtagtg atcctatctt tattcaacta agtgaccctt
     6241 aacctgggat ctactgtact gtaattcaca acattatata atattatgct ccccagtatt
     6301 ggtgaatgat taacaataca aaattggcag cttagtagtt cagaatcttt ggaatacatt
     6361 gaaataaatt gaaattcata aacatagttc attttttaag cacacgatca aaccatctac
     6421 tgaaatcata cactcagagg agacagttcc atctatgact aaatacttag cttgaatact
     6481 attctctatt ttactaatcc taattccttt tctatgtatt ttactgtatt tattcgtatg
     6541 agatcaacag gtatcatcag acacctactg agtgctcaga aggagtgagt actgtgagga
     6601 agctcaggtt cagttttgtc tgcccatgaa gtgtcttctc caggaggtta gcagtgttgt
     6661 tttgacttct aaacaaagtt gaacagaagg tgtttgtaaa cagaacaaac aaaacaaaat
     6721 ccaacttcat tagtttcagt gagatgtacc actgtagaag tggaagtgtt taaaaataaa
     6781 atacccatgt actttaacat ttaagaaaaa ttctgtaagc tagttgtttc tgttggtaat
     6841 ataaggatat ggtattagct tgaaaggaag caaaaggcct gcatgttagc cctgttctgc
     6901 cattcatcag ctgagatgct gagtagtcgg taaattatcc tgagtcttat ttttaagttc
     6961 tagttttctt gtttgtgagt tggataaaaa ctactcagtg aagaacaaca ttcttcaggt
     7021 attatgtcat gttatacttg ttaattatta agttacaact gatgacgagt gcaccttctg
     7081 agaatatttt aagtgaaaac ttttattaga gaaaaagtct aagtgaaaat atacacccag
     7141 ggcggactac ctaaaaacct gacaaattcc taacaaggtg ctgaagtgaa agaaaaaaat
     7201 gagcttgtct gtggacagaa gagtgagaac atctgttatc aagtcattgg tggttattta
     7261 gcacaacaga ggagcaagct ttgggttttt ctcaaagagg aattagtata gtactcatct
     7321 tcatatttgg catactcttc aggtactaaa gataaaaggg gtggtaaatt taaaatgatt
     7381 tagcagctac ccatgggact agggggaaaa ataaggtgac taggaaaaag ctttttataa
     7441 gcagttgtga gttaggtata acagcccaag gagagaggga agtcaaaagt agtatagaaa
     7501 ggagaatcaa ctggatgtgt tcaaaaatga gtgtcagctt gcttcagaag atgttctgca
     7561 gtgtgagaca gtccctgaga attggtggga accacggtat ggcctagtat actgctgcta
     7621 gagagatatc ataacaaatg tgcatttcta gtattcatat ggagagacat gaaacttcat
     7681 aatacaaatc taaatatctc tcacaattca tctctcccat taaatattaa actaactgct
     7741 caatatgtga aagagaagat cttgcctttc atatgtgcaa gactctgggg cctgatccct
     7801 agcaccaggt agtgatcgag aggagctaag gcttttagac tgttacgggt atcctagact
     7861 tttcatctaa tgcaatctca aaaacaaaca aacaaacaaa caaaaaaacc aattatgcat
     7921 tataactttt gtccagggag agctagctag tcagtaaggg tgaccagtgt aacccagatg
     7981 ggacagagat ttgcctagag acactcagtg gctttgggat ctctagtacc ttgttttctt
     8041 acacggatcc cattctttga cacagcagcc tctgcttgtc ttgtaggtac tgtccatgta
     8101 tgtttttgaa gctggacaaa caaaattcgt ataatccctc gactgctgtt gcgcatagtc
     8161 accctcgtac cgtagcctta ctactaaccg ttccttattt tgctttcatg ctgtaagtga
     8221 aaaaaaattt gatacccttt ctataaacat ttttaaaagg tttttaagaa gcaaatatct
     8281 atttccaaag cagctggcat atcatcacga ccacggcttt attgtgctat agtaagtctc
     8341 tctgctttac tggggagaag caaatcattc tcactggaga aaccagttcc cccgtcacct
     8401 ctggtgtcct tctagttttt taaggctttg tcttaactgt gacattacac ttacgtttaa
     8461 aacctcttaa aggatgtatt cgatgattct tccaaccaat gcatctgctc tgcactattc
     8521 attgatggaa ccctggctac cacgtagccc ttgacctcca agtagtttac ctatgcaaga
     8581 cctgtgacac tctggattca tttttcttca ttacagaaag cgatcataaa tgacttaagc
     8641 ataagagatt tgtctttgag gttttttttt tctatttttt ttaaacatca gctattttcc
     8701 ctctgtaatt tttaccaaaa caattatcgt aagtgctaga atatatacta ttttgcagga
     8761 ataaaataac caagacataa tatatttctt tggattttgt tttgtaagaa atgccagcac
     8821 taactatata gagttgattc tttgcctaga ataatttttt cccttttaag agtcataagt
     8881 aacattttat tttcacaaag catgcatata acttacatga tatagtcagg gacctgaggt
     8941 gtaacttgct aagtgaaccc caaggttatt ttatcttgca aaagaaacct aaaccaaact
     9001 aagggcctta cagtttatgg ttagactgaa tcaaatgctg taacctcagt ttttccaaaa
     9061 acagctcctg actgcacaag caggtcctgc agttgttgag tatgaaatag cactgatagg
     9121 aaatgcatgt gcatctttgc agactgtatt tcctctggaa aagacttttc tacttttaat
     9181 ataattaagc cataacagtt tcatgctgtg gaaaggatga aaaggttcat tttaagagat
     9241 tatatagtat gaactttcac atttattgtg aaacatctaa ctttgccagt gttcagcaag
     9301 ttttttcttt tggggtgttg gagggtggta atggggaggg gtagtgttgg ttttaggggt
     9361 tttaactctg tgaaatttga aaacaggaca gttgttggct atggtactta ctagttttgt
     9421 agtaatgttt tgctagcctg actttccttc tggtttttat gtccatgttt cccagtgact
     9481 gttaactctt cttgtttggg gtgtgtgcag aatagtgtct catctgtgtg taggcagtca
     9541 gtgtatgcac atgtgtcctt tgactacaga agcacactgt gtgacaatgg aatggggtgt
     9601 ggctgggagt gggatgctga agctttaaga gcatttgttt ttattcagaa cagtatttcc
     9661 catcttttgc ctgcaggcag ggaaagtgta cagtatttat tttgtttctg ttttactctg
     9721 aatttgtaag tctctaagta gcttatatta ttattatagg gaaaataagt gacttgctta
     9781 aagttgtatt tagtattctt acttcctaat ttctgtattt taaaatattg aaattaaaac
     9841 tgtattactt ttgttctgat tttttttagc actcagtgta ttttttgccc attttgtcta
     9901 aaagtataaa tgttgaaagt tgtataaaat gtctctgaaa gaaaaaaatc tgaattctat
     9961 atacga
//
