LOCUS       XM_039086476            6785 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lysine demethylase 6B (Kdm6b),
            transcript variant X8, mRNA.
ACCESSION   XM_039086476
VERSION     XM_039086476.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086476.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6785
                     /gene="Kdm6b"
                     /gene_synonym="Jmjd3"
                     /note="lysine demethylase 6B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 40 ESTs, 1 long SRA read, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 74 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363630"
                     /db_xref="RGD:1307629"
     CDS             570..5480
                     /gene="Kdm6b"
                     /gene_synonym="Jmjd3"
                     /codon_start=1
                     /product="lysine-specific demethylase 6B isoform X1"
                     /protein_id="XP_038942404.1"
                     /db_xref="GeneID:363630"
                     /db_xref="RGD:1307629"
                     /translation="MHRAVDPPGARSAREAFALGGLSCAGAWSSCPPHPPPRNSWLPG
                     GRCSASIGQPPLSAPLPPSHGNSSGHPNKPYYASGTPTPRPLHGKLESLHGCVQALLR
                     EPAQPVLWEQLGQLYESEHDSEEAICCYHRALRYGGSFAELGPRIGRLQQAQLWNLHA
                     GSCQHRAKVLPPLEQVWNLLHLEHKRNYGAKRGGPPVKRSAEPPVVQPMPPAALSGPS
                     GEEGLSPGGKRRRGCSSEQAGLPPGLPLPPPPPPPPPPPPPPPPPPLPGLAISPPFQL
                     TKPGLWNTLHGDAWGPERKGSAPPERQEQRHSLPHPHPYPAPAYTAHPPSHRLGPATP
                     LGPGPRPPGAESHGCLPATRPPGSDLRESRVQRSRMDSSVSPAASTACVPYAPSRPPG
                     LPGTSSSSSSSNNTGLRGVEPSPGIPGADHYQNPALEIAPHQARLGPSAHSSRKPFLT
                     APAAAPHLSLPSGTPSSPPPPCPRLLRPPPPPAWMKGSACRSAREDGEILGELFFGAE
                     GPPRPPPPPLPHRDGFLGPPNPRFSVGTQDSHTPPTPPTTTSSSSSSSSSNSHSSSPT
                     GPVPFPPPPYLARSIDPLPRPSSPTLSSQDPPLPPLTLALPPAPPSSCHQNTSGSFRR
                     SESPRPRVSFPKTPEVGQGPPPGSLSKAPQPVPPGVGELPARGPRLFDFPPTPLEDQF
                     EEPAEFKILPDGLANIMKMLDESIRKEEEQQQQEAGAVPPPPLKEPFASLRSSLPSDT
                     APAATTAAATPTTTTTTTTQEEEKKPPPALPPPPPLAKFPPPPQPPPPPPASPASLLK
                     SLASVLEGQKYCYRGTGAAVSTRPGSVPATQYSPSPASGATAPPPTSVAPSAQGSPKP
                     SVSSSSQFSTSGGPWVRERRAGEEPAPGPVTPAQLPPPLPLPPARSESEVLEEISRAC
                     ETLVERVGRSAINPADPVDIADPVDSGTEPQPPPAQAKEESGGVAVAAAGPGSGKRRQ
                     KEHRRHRRTCRDSVGRRPREGRAKAKAKAPKEKSRRVLGNLDLQSEEIQGREKARPDV
                     GGASKVKTPTTPAPPPAPAPSAQPTPPSAPVPGKKTREEAPGPPGVSRADMLKLRSLS
                     EGPPKELKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAADVMRASKNAKVKGK
                     FRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPI
                     TVIRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCES
                     SRSHTTIAKYAQYQASSFQESLQEEKESEDEESEEPDSTTGTSPSSSAPDPKNHHIIK
                     FGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGS
                     RTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDD
                     LYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYE
                     WNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGK
                     KIAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVV
                     VLEQYRTEELAQAYDAFTLAPASTSR"
ORIGIN      
        1 agggggggtg gggggaatcg gttaaagtcc tggagtccag atcccggatg cgagaggcgg
       61 agctcggctt taccgggagt gcccggatgg agagggcgtg gtttcgactc aagtggaatt
      121 aaccctttct gggcggcagg ctttttgggc tgtaggtcgg gttgggaagg ttggattgtc
      181 agcctcagaa gtgtgtcggc catccaggct ggccctggac atgtgcgtct accttccgtc
      241 tgtcttcgag gagtctgtgg gtgtctgtct ttgtgcttgt ccctggttgt tccctcccct
      301 tggctgttac tgaggcggag acaagggtga tgattggctt tctggggata gagaagtctt
      361 gtgattggct aaatttctga agctcttgaa gctgtgagag gacgctccca cggaggctgg
      421 aattggttgc agaaggccag agaccgtcac ctggaaacag tgggcactct tgttaagggc
      481 agttggagct ggaccatcgg gccagagagc tggggcaggg ggctgtgccc catctccagg
      541 gctcctgggg ccactgctga cctggctgga tgcatcgggc agtggaccct ccaggggccc
      601 gctctgcacg ggaagccttt gcccttgggg gcttgagctg tgctggggct tggagctcct
      661 gcccacccca tcctcctccc cgaaactcat ggctgcctgg aggcagatgc tctgccagca
      721 ttgggcagcc cccactctct gctcctttac ccccctctca tggcaacagc tccgggcacc
      781 ctaacaagcc ctattatgct tctgggactc ctaccccaag acccctccat gggaagttgg
      841 agtctctaca tggctgtgta caggcattgc tccgggagcc agcccagccg gtcttatggg
      901 aacagcttgg acagttgtat gagtcggagc acgacagcga ggaggccata tgctgctacc
      961 acagggccct tcgctacgga ggaagcttcg ctgaactggg gccccgaatt ggccgattgc
     1021 agcaggccca gctctggaac cttcatgctg gttcctgtca gcacagagcc aaggtcctgc
     1081 ctcccctgga gcaagtatgg aatttgctgc accttgagca caaacggaac tatggggcta
     1141 agcgaggggg ccctccagtg aagagatctg ctgaaccccc agtggtccag cctatgcctc
     1201 ctgccgcact ctcaggcccc tcaggagagg aaggcctcag ccctggaggc aagcgcagga
     1261 gaggctgcag ctctgaacag gctggccttc ccccgggtct gccactccct ccaccaccac
     1321 cacccccacc tccacccccg ccacccccac ccccaccacc gctgcctggc ctggctatta
     1381 gccccccatt tcagctgact aaaccagggc tgtggaatac cctgcatgga gatgcttggg
     1441 gccctgagcg caagggttca gcacccccag agcgccagga gcagcggcac tcgctgcctc
     1501 accctcatcc atacccagct cctgcctaca ctgctcatcc gcccagccac cggctgggcc
     1561 cggccacacc ccttggtcca ggtccccgac ccccaggagc agagagccat ggctgcctgc
     1621 ctgccacccg tccccccgga agtgacctta gagagagcag agttcagagg tcgcggatgg
     1681 actccagcgt ttcaccagca gcatctaccg cctgcgtgcc ttacgcccct tcccggcccc
     1741 ctggcctccc cggcaccagc agcagcagca gtagcagtaa caacactggt cttcggggtg
     1801 tggagccgag cccaggcatt cctggcgctg accattacca aaaccctgcg ttggagatag
     1861 cccctcacca ggcccgcctg ggtccctccg cacacagcag tcggaaacca tttttgacag
     1921 cccctgctgc cgctccccac ttatccctac catccgggac cccttcatcc cctccacccc
     1981 catgtcctcg cctcttgcgc cctccaccac cccctgcttg gatgaagggc tcagcctgcc
     2041 gctcagctcg agaggatgga gagatcttag gggagctctt ctttggtgct gagggacctc
     2101 cccgtcctcc tcccccaccc cttccccacc gtgatggctt cttggggcct ccaaaccccc
     2161 gcttttctgt gggcactcag gattcgcata cccctcccac tcccccaacc accaccagca
     2221 gcagcagcag cagcagcagc agcaacagcc acagcagtag tcctactggg cctgtgccct
     2281 tcccaccacc tccctatctg gccagaagta tagaccccct tcccaggcca tctagcccaa
     2341 cactgagctc ccaggaccca cctcttccac cactgactct tgccctgcct ccagcccctc
     2401 cctcctcctg ccaccaaaat acctcaggaa gcttcaggcg ctcggagagc ccccggccca
     2461 gggtctcctt cccaaagacc cccgaggtgg ggcaggggcc acctccaggc tctctgagta
     2521 aagcccccca gcctgtgcca cctggggttg gagagctgcc tgcccgaggc ccgaggctct
     2581 ttgattttcc accaactcca ctggaggacc agtttgaaga gccagctgaa ttcaagatcc
     2641 tccctgatgg gctagctaac atcatgaaga tgctggatga atccattaga aaggaggaag
     2701 agcagcagca gcaagaggca ggcgcggttc ccccaccccc actcaaagag ccctttgcat
     2761 ctctacggtc ttcacttccc agtgacacag ccccagctgc caccactgct gctgcaactc
     2821 ccaccaccac caccaccacc accacccaag aagaggagaa gaagccacca ccagccctgc
     2881 caccaccacc gcctctagcc aagtttcctc caccacccca gcccccacca cctccaccag
     2941 ccagcccagc cagcctgctc aaatcattgg cctctgttct tgaggggcaa aagtactgtt
     3001 atcgggggac tggagcagcc gtttcaacca ggcccgggtc cgtgcccgcc actcagtatt
     3061 cccctagtcc tgcatcaggt gctaccgccc caccacccac ttcagtggcc cctagcgccc
     3121 agggctcccc caagccctct gtttcctcgt catctcagtt ctctacctca ggtgggcctt
     3181 gggtccgaga gcgcagggca ggtgaagagc cagcaccagg ccccgtgacc cctgcccagt
     3241 tgcccccacc tctgccgctg ccccctgctc gttctgagtc tgaggtgcta gaagaaatca
     3301 gtcgggcttg tgagaccctt gtagagcggg tgggccggag tgccatcaac ccagcagacc
     3361 cagtggacat agcagaccca gtggacagtg ggactgagcc acagccgcct cctgcacagg
     3421 ccaaggagga gagtggggga gtggcagtgg cggcagcagg tccaggtagt ggtaagcgtc
     3481 gtcagaagga gcatcggagg cacagacgga cctgtaggga cagtgtgggt cgtaggcccc
     3541 gtgaggggag ggccaaggcc aaggccaagg ctcccaaaga aaaaagccga agggtgctgg
     3601 ggaacttgga cttgcagagt gaagagatcc agggccggga gaaggcccgg cctgatgtag
     3661 gtggggcttc caaagtcaag acgcccacaa ctccagcgcc cccacctgct cctgccccct
     3721 ctgctcagcc aacaccccca tcagctcctg tccctgggaa gaagactcga gaggaagctc
     3781 cagggcctcc aggtgtgagc cgtgcagata tgctgaagct tcggtcgctt agtgaggggc
     3841 cacctaagga gctgaagatc aggctcatca aggtggagag tggggacaag gagaccttca
     3901 tcgcctctga ggtagaagag cggcggctgc gcatggcaga cctcaccatc agccactgcg
     3961 ctgctgatgt catgcgtgcc agcaagaatg ccaaggtgaa agggaaattc cgagagtcct
     4021 acctttcccc tgcccagtct gtgaaaccga agatcaacac tgaggagaag ctgccccggg
     4081 aaaaactcaa ccctcctaca cccagcattt atttggagag caaacgagac gccttctcgc
     4141 cggtcctgct gcagttctgt acagatcccc ggaaccccat cactgtcatc aggggcctgg
     4201 caggttcact tcggctcaac ttaggccttt tttccaccaa gactctggtg gaggcgagcg
     4261 gtgaacacac agtggaggtc cgtacccaag tgcagcagcc ctcagacgag aactgggatc
     4321 tgacaggtac cagacagatc tggccctgtg agagctcccg ttcacacacc accatcgcta
     4381 aatatgcaca gtaccaggct tcgtccttcc aggagtcact gcaggaggag aaagagagtg
     4441 aggatgagga atccgaggaa ccagacagca ctacaggaac ctctcccagc agcagtgcac
     4501 cagaccccaa gaaccatcac atcatcaagt ttggcacaaa catcgacctg tctgatgcca
     4561 agaggtggaa gccacaacta caggagctgc tgaaactgcc tgccttcatg cgagtaacat
     4621 ccacaggcaa catgcttagc catgtgggac acaccatcct gggcatgaac accgtgcagc
     4681 tatacatgaa ggttcctggc agtcgaacgc caggccacca ggagaataac aatttttgct
     4741 ctgtcaatat caacattggc cccggggact gcgagtggtt cgcggtacat gagcactatt
     4801 gggagaccat cagcgccttc tgcgatcggc atggtgtgga ttacttgact ggttcctggt
     4861 ggccaatctt ggatgacctc tatgcgtcca atattcctgt ttaccgcttc gtgcagcgcc
     4921 ctggagacct tgtgtggatt aatgcaggga ctgtgcattg ggtgcaggct actggctggt
     4981 gcaacaacat tgcctggaac gtggggcccc tcaccgccta tcaataccag ctggccctgg
     5041 agcgatatga gtggaacgag gtgaagaacg tcaagtccat tgtacccatg attcatgtgt
     5101 cctggaacgt agctcgaacg gtcaagatca gtgatcctga cttgttcaaa atgatcaagt
     5161 tctgcctcct gcagtcaatg aagcactgcc aggtgcagcg ggagagcctg gtgcgggcag
     5221 ggaagaaaat cgcttaccaa ggccgcgtca aggacgagcc tgcctactac tgcaacgaat
     5281 gcgatgtgga ggtgttcaac atcctgttcg ttacaagtga gaatggcagc cgaaacacgt
     5341 acctggtgca ctgcgagggc tgtgcgcgcc gtcgcagtgc gggcctacag ggcgtggtgg
     5401 tgctagagca gtaccgcaca gaggagctgg cacaggccta tgatgccttc acactggctc
     5461 ctgccagcac gtcgcgatga ggccggacgc cccgctcgcc cgcccacgcg ggcggggcca
     5521 ccagcacacg cctgggctgg acctaggtcc cgcctctggc cgggaagggg gttgggccca
     5581 gcccttccac cctattggca gctcccctca cttaatttat taagaaaaaa aaattttttt
     5641 aacaaatacg aggaaaaaaa ggaaaaaaaa tgggagacgg ggagggggct ggcagcccct
     5701 cgcccaccag cgcctcccct caccgacttt ggcctttcta gcaacagaca caaggaccag
     5761 gctccggcgg cggcgggggt cacatacggg ttccctcaag cctgcccgcc gcgcgcccgc
     5821 ctgccgcccg ccggcgcaga cgttcgcggc tcgttgtgta catagacatt cggcagccga
     5881 ggtttttaat gagattcttt ctatgggctt tacccctccc caggacctcc tttttttact
     5941 tccaatgcta gctgtgatcc ctgtatatgt ctcttgttta ttcactcggt tatgattcgt
     6001 atttttgttc tttttgtttt tggtttttaa tttataacag tcccactcac ctctatttat
     6061 tcattttttg ggtttttttg ttttgttttt tctttttttc tttttttttt tgggaaaacc
     6121 cgacctccta caccccaagc tatccctcct gcctctttgg gaggcccatt cctgggccct
     6181 ccctacgccc cagtatatgt ccgggcttgg cccgtccgtc tccgcccgcc cgcggctcca
     6241 gccgggttct catggtgctc aaacctgctc ccctccccta cgtcctgcac tttcttggac
     6301 cagtaccccc actcccgacc cgaccccaac cccacctgag ggtgagcgac tcctgtactg
     6361 taggggaaga agtgggaact gaaatggtat tttgtaaaaa aaataaataa ataaaataaa
     6421 aaaatgtttt aaagaaataa ctatgaggaa aaggaaccct gtcctcccca gcctcggcca
     6481 ttttaaaaac agtggacacc tacacacaca catacccccc ttttttaagg cgtgaaacat
     6541 cccagggcag ggcctctttg gggcagggac accctggggt gatttttctc tggggcttta
     6601 ttttcatttt cttagttcgt tttctcccgc tggggctgcg gaggggtggg gggatttaca
     6661 gtcccgcccc ctcgcactgc actgtctctc tgccccaggg gcagaggggg cttcccatcc
     6721 ctaccctatt ttcggtgatt tttgtgtgag aatattatta aaaataaaaa caggaaaaaa
     6781 aaaga
//
